Human Gene HMMR (ENST00000358715.3) from GENCODE V44
  Description: Homo sapiens hyaluronan mediated motility receptor (HMMR), transcript variant 2, mRNA. (from RefSeq NM_012484)
RefSeq Summary (NM_012484): The protein encoded by this gene is involved in cell motility. It is expressed in breast tissue and together with other proteins, it forms a complex with BRCA1 and BRCA2, thus is potentially associated with higher risk of breast cancer. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Dec 2008].
Gencode Transcript: ENST00000358715.3
Gencode Gene: ENSG00000072571.20
Transcript (Including UTRs)
   Position: hg38 chr5:163,460,657-163,491,941 Size: 31,285 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg38 chr5:163,460,693-163,491,164 Size: 30,472 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:163,460,657-163,491,941)mRNA (may differ from genome)Protein (724 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HMMR_HUMAN
DESCRIPTION: RecName: Full=Hyaluronan mediated motility receptor; AltName: Full=Intracellular hyaluronic acid-binding protein; AltName: Full=Receptor for hyaluronan-mediated motility; AltName: CD_antigen=CD168;
FUNCTION: Involved in cell motility. When hyaluronan binds to HMMR, the phosphorylation of a number of proteins, including PTK2/FAK1 occurs. May also be involved in cellular transformation and metastasis formation, and in regulating extracellular- regulated kinase (ERK) activity.
SUBUNIT: Subunit of the HARC complex.
SUBCELLULAR LOCATION: Cell surface. Cytoplasm (By similarity).
TISSUE SPECIFICITY: Expressed in breast cancer cell lines and in normal breast tissue.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HMMR
Diseases sorted by gene-association score: breast cancer* (129), fibrosarcoma (4), leukemia, acute myeloid (0)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.94 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 51.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -11.8036-0.328 Picture PostScript Text
3' UTR -158.00777-0.203 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026203 - IHABP

ModBase Predicted Comparative 3D Structure on O75330
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0005540 hyaluronic acid binding

Biological Process:
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0030214 hyaluronan catabolic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0015630 microtubule cytoskeleton
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AY623426 - Homo sapiens hyaluronan-mediated motility receptor (HMMR) mRNA, complete sequence.
LF384717 - JP 2014500723-A/192220: Polycomb-Associated Non-Coding RNAs.
MA620294 - JP 2018138019-A/192220: Polycomb-Associated Non-Coding RNAs.
BC057235 - Homo sapiens hyaluronan-mediated motility receptor (RHAMM), mRNA (cDNA clone IMAGE:6616448), partial cds.
AK313603 - Homo sapiens cDNA, FLJ94172.
BC030505 - Homo sapiens hyaluronan-mediated motility receptor (RHAMM), mRNA (cDNA clone IMAGE:3919885), partial cds.
BC006984 - Homo sapiens hyaluronan-mediated motility receptor (RHAMM), mRNA (cDNA clone IMAGE:3997460), partial cds.
AK302975 - Homo sapiens cDNA FLJ53375 complete cds, highly similar to Hyaluronan mediated motility receptor.
AK303616 - Homo sapiens cDNA FLJ53429 complete cds, highly similar to Hyaluronan mediated motility receptor.
BC070281 - Homo sapiens hyaluronan-mediated motility receptor (RHAMM), mRNA (cDNA clone IMAGE:4063479), partial cds.
BC017793 - Homo sapiens hyaluronan-mediated motility receptor (RHAMM), mRNA (cDNA clone IMAGE:4698833), partial cds.
U29343 - Homo sapiens hyaluronan receptor (RHAMM) mRNA, complete cds.
AF032862 - Homo sapiens intracellular hyaluronic acid binding protein (IHABP) mRNA, complete cds.
BC108904 - Homo sapiens hyaluronan-mediated motility receptor (RHAMM), mRNA (cDNA clone MGC:119494 IMAGE:40007903), complete cds.
BC108905 - Homo sapiens cDNA clone IMAGE:40007904, containing frame-shift errors.
BC107869 - Homo sapiens cDNA clone IMAGE:4724268, containing frame-shift errors.
AK290577 - Homo sapiens cDNA FLJ75647 complete cds, highly similar to Homo sapiens hyaluronan-mediated motility receptor (RHAMM) (HMMR), transcript variant 2, mRNA.
KJ901492 - Synthetic construct Homo sapiens clone ccsbBroadEn_10886 HMMR gene, encodes complete protein.
KJ896989 - Synthetic construct Homo sapiens clone ccsbBroadEn_06383 HMMR gene, encodes complete protein.
BC033568 - Homo sapiens, Similar to hyaluronan-mediated motility receptor (RHAMM), clone IMAGE:4777447, mRNA.
LF325429 - JP 2014500723-A/132932: Polycomb-Associated Non-Coding RNAs.
MA561006 - JP 2018138019-A/132932: Polycomb-Associated Non-Coding RNAs.
LF325428 - JP 2014500723-A/132931: Polycomb-Associated Non-Coding RNAs.
MA561005 - JP 2018138019-A/132931: Polycomb-Associated Non-Coding RNAs.
LF325426 - JP 2014500723-A/132929: Polycomb-Associated Non-Coding RNAs.
MA561003 - JP 2018138019-A/132929: Polycomb-Associated Non-Coding RNAs.
JD566406 - Sequence 547430 from Patent EP1572962.
JD289217 - Sequence 270241 from Patent EP1572962.
JD528654 - Sequence 509678 from Patent EP1572962.
DM110835 - Novel Cancer Marker and Use Thereof.
JD083463 - Sequence 64487 from Patent EP1572962.
JD424540 - Sequence 405564 from Patent EP1572962.
JD376952 - Sequence 357976 from Patent EP1572962.
LF325425 - JP 2014500723-A/132928: Polycomb-Associated Non-Coding RNAs.
MA561002 - JP 2018138019-A/132928: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04512 - ECM-receptor interaction

Reactome (by CSHL, EBI, and GO)

Protein O75330 (Reactome details) participates in the following event(s):

R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-2160915 Receptor-mediated uptake of HA
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-2160884 HA:HAR:HYAL2 binds to SLC9A1:p-CHP:Ca2+
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-2160916 Hyaluronan uptake and degradation
R-HSA-69275 G2/M Transition
R-HSA-2142845 Hyaluronan metabolism
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1640170 Cell Cycle
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K3G2, B4E114, D3DQK9, D3DQL0, E9PCS0, ENST00000358715.1, ENST00000358715.2, HMMR_HUMAN, IHABP, NM_012484, O75330, Q32N02, Q92767, RHAMM, uc003lzf.1, uc003lzf.2, uc003lzf.3, uc003lzf.4, uc003lzf.5
UCSC ID: ENST00000358715.3
RefSeq Accession: NM_012484
Protein: O75330 (aka HMMR_HUMAN)
CCDS: CCDS4362.1, CCDS4363.1, CCDS47334.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.