Human Gene RNF146 (ENST00000608991.5) from GENCODE V44
  Description: Homo sapiens ring finger protein 146 (RNF146), transcript variant 2, mRNA. (from RefSeq NM_030963)
Gencode Transcript: ENST00000608991.5
Gencode Gene: ENSG00000118518.17
Transcript (Including UTRs)
   Position: hg38 chr6:127,266,883-127,288,362 Size: 21,480 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr6:127,286,617-127,287,693 Size: 1,077 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:127,266,883-127,288,362)mRNA (may differ from genome)Protein (358 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGencode
GeneCardsHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RN146_HUMAN
DESCRIPTION: RecName: Full=E3 ubiquitin-protein ligase RNF146; EC=6.3.2.-; AltName: Full=Dactylidin; AltName: Full=Iduna; AltName: Full=RING finger protein 146;
FUNCTION: E3 ubiquitin-protein ligase that specifically binds poly-ADP-ribosylated (PARsylated) proteins and mediates their ubiquitination and subsequent degradation. May regulate many important biological processes, such as cell survival and DNA damage response. Acts as an activator of the Wnt signaling pathway by mediating the ubiquitination of PARsylated AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex. Acts in cooperation with tankyrase proteins (TNKS and TNKS2), which mediate PARsylation of target proteins AXIN1, AXIN2, BLZF1, CASC3, TNKS and TNKS2. Recognizes and binds tankyrase-dependent PARsylated proteins via its WWE domain and mediates their ubiquitination, leading to their degradation. Different ubiquitin linkage types have been observed: TNKS2 undergoes ubiquination at 'Lys-48' and 'Lys-63', while AXIN1 is only ubiquitinated at 'Lys- 48'. May regulate TNKS and TNKS2 subcellular location, preventing aggregation at a centrosomal location. Neuroprotective protein. Protects the brain against N-methyl-D-aspartate (NMDA) receptor- mediated glutamate excitotoxicity and ischemia, by interfering with PAR-induced cell death, called parthanatos. Prevents nuclear translocation of AIFM1 in a PAR-binding dependent manner. Does not affect PARP1 activation (By similarity). Protects against cell death induced by DNA damaging agents, such as N-methyl-N-nitro-N- nitrosoguanidine (MNNG) and rescues cells from G1 arrest. Promotes cell survival after gamma-irradiation. Facilitates DNA repair.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Can form homooligomers. Interacts with PARsylated AXIN1, AXIN2, BLZF1, CASC3, HIST1H1C, IPO7, LIG3, NCL, PARP1, XRCC1, XRCC5 and XRCC6. Interacts with DDB1, DHX15, IQGAP1, LRPPRC, PARP2, PRKDC, RUVBL2, TNKS1 and TNKS2. Binding often leads to interactor ubiquitination, in the presence of the appropriate E1 and E2 enzymes, and proteasomal degradation.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Note=Translocates to the nucleus after DNA damage, such as laser- induced DNA breaks, and concentrates at DNA breaks. This translocation requires PARP1 activation and PAR-binding.
TISSUE SPECIFICITY: Ubiquitously expressed. Up-regulated in brains from patients with Alzheimer disease.
DOMAIN: The WWE domain mediates non-covalent PAR-binding.
PTM: Ubiquitinated; autoubiquitinated. Polyubiquitinated in the presence of UBE2D1, UBE2D2 and UBE2D3. Multimonoubiquitinated in the presence of UBE2E1. Not ubiquinated in the presence of UBE2H, CDC34, UBE2L3, UBE2L6, nor UBE2C. In the absence of PAR, autoubiquitination occurs on Lys-85, Lys-95 and Lys-176 via 'Lys- 11' and 'Lys-48' ubiquitin linkages. In the presence of PAR, Lys- 131 and Lys-176 are ubiquitinated via 'Lys-6', 'Lys-33' and 'Lys- 48' ubiquitin linkages. Autoubiquitination is enhanced upon PAR- binding.
DISEASE: Note=Defects in RNF146 are a cause of susceptibility to breast cancer.
MISCELLANEOUS: Was named dactylidin after the Greek term 'daktylidi' for ring, 'the thing around the finger' (PubMed:15813938). Was named Iduna after the Norse goddess of protection and eternal youth (PubMed:21602803).
SIMILARITY: Contains 1 RING-type zinc finger.
SIMILARITY: Contains 1 WWE domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: RNF146
Diseases sorted by gene-association score: norse (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 57.22 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 966.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -103.40423-0.244 Picture PostScript Text
3' UTR -139.20669-0.208 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004170 - WWE-dom
IPR018123 - WWE-dom_subgr
IPR001841 - Znf_RING
IPR013083 - Znf_RING/FYVE/PHD
IPR017907 - Znf_RING_CS

Pfam Domains:
PF02825 - WWE domain
PF13639 - Ring finger domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2D8T - NMR MuPIT 3V3L - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NTX7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016740 transferase activity
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity
GO:0072572 poly-ADP-D-ribose binding

Biological Process:
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0016055 Wnt signaling pathway
GO:0016567 protein ubiquitination
GO:0051865 protein autoubiquitination
GO:0070936 protein K48-linked ubiquitination
GO:0090263 positive regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AK027558 - Homo sapiens cDNA FLJ14652 fis, clone NT2RP2002208.
AL136829 - Homo sapiens mRNA; cDNA DKFZp434O1427 (from clone DKFZp434O1427).
AX721119 - Sequence 79 from Patent WO0220754.
JD464547 - Sequence 445571 from Patent EP1572962.
JD416973 - Sequence 397997 from Patent EP1572962.
JD319131 - Sequence 300155 from Patent EP1572962.
JD506357 - Sequence 487381 from Patent EP1572962.
JD553844 - Sequence 534868 from Patent EP1572962.
JD567093 - Sequence 548117 from Patent EP1572962.
AK027436 - Homo sapiens cDNA FLJ14530 fis, clone NT2RM2000101.
BC008235 - Homo sapiens ring finger protein 146, mRNA (cDNA clone MGC:9892 IMAGE:3868592), complete cds.
AJ420549 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1624397.
AK027776 - Homo sapiens cDNA FLJ14870 fis, clone PLACE1002499.
AJ315122 - Homo sapiens mRNA for dactylidin.
CU678895 - Synthetic construct Homo sapiens gateway clone IMAGE:100017093 5' read RNF146 mRNA.
AB463233 - Synthetic construct DNA, clone: pF1KB8589, Homo sapiens RNF146 gene for ring finger protein 146, without stop codon, in Flexi system.
AM392718 - Synthetic construct Homo sapiens clone IMAGE:100001809 for hypothetical protein (RNF146 gene).
AM393788 - Synthetic construct Homo sapiens clone IMAGE:100001815 for hypothetical protein (RNF146 gene).
KJ894862 - Synthetic construct Homo sapiens clone ccsbBroadEn_04256 RNF146 gene, encodes complete protein.
CR533514 - Homo sapiens full open reading frame cDNA clone RZPDo834B1019D for gene RNF146, ring finger protein 146; complete cds, incl. stopcodon.
JD551445 - Sequence 532469 from Patent EP1572962.
JD037578 - Sequence 18602 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NTX7 (Reactome details) participates in the following event(s):

R-HSA-3640844 RNF146 binds RibC-AXIN:TNKS complex
R-HSA-3640861 RNF146 ubiquitinates ADP-ribosylated AXIN
R-HSA-3640872 USP34 deubiquitinates AXIN1,AXIN2
R-HSA-8948832 RNF146 polyubiquitinates PARylated PTEN
R-HSA-4641257 Degradation of AXIN
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-5689880 Ub-specific processing proteases
R-HSA-8948751 Regulation of PTEN stability and activity
R-HSA-195721 Signaling by WNT
R-HSA-5688426 Deubiquitination
R-HSA-6807070 PTEN Regulation
R-HSA-162582 Signal Transduction
R-HSA-597592 Post-translational protein modification
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-392499 Metabolism of proteins
R-HSA-9006925 Intracellular signaling by second messengers

-  Other Names for This Gene
  Alternate Gene Symbols: E1P572, ENST00000608991.1, ENST00000608991.2, ENST00000608991.3, ENST00000608991.4, NM_030963, Q6FIB2, Q7L8H4, Q96K03, Q96T06, Q9NTX6, Q9NTX7, RN146_HUMAN, uc003qaw.1, uc003qaw.2, uc003qaw.3, uc003qaw.4
UCSC ID: ENST00000608991.5
RefSeq Accession: NM_001242846
Protein: Q9NTX7 (aka RN146_HUMAN)
CCDS: CCDS5136.1, CCDS56449.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.