Human Gene IQANK1 (ENST00000533004.5) from GENCODE V44
  Description: Homo sapiens IQ motif and ankyrin repeat containing 1 (IQANK1), transcript variant 2, mRNA. (from RefSeq NM_001381875)
Gencode Transcript: ENST00000533004.5
Gencode Gene: ENSG00000203499.12
Transcript (Including UTRs)
   Position: hg38 chr8:143,734,140-143,746,337 Size: 12,198 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg38 chr8:143,735,854-143,743,960 Size: 8,107 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:143,734,140-143,746,337)mRNA (may differ from genome)Protein (91 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsLynx
MalacardsMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.31 RPKM in Esophagus - Mucosa
Total median expression: 89.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.6084-0.471 Picture PostScript Text
3' UTR -813.102377-0.342 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  AK124079 - Homo sapiens cDNA FLJ42085 fis, clone TCOLN2002278.
AK125852 - Homo sapiens cDNA FLJ43864 fis, clone TESTI4007799.
KF773847 - Homo sapiens lung cancer associated long non-coding RNA 7, partial sequence.
AK091211 - Homo sapiens cDNA FLJ33892 fis, clone CTONG2007623.
AX746851 - Sequence 376 from Patent EP1308459.
JD558597 - Sequence 539621 from Patent EP1572962.
JD531701 - Sequence 512725 from Patent EP1572962.
JD333023 - Sequence 314047 from Patent EP1572962.
JD198570 - Sequence 179594 from Patent EP1572962.
JD528132 - Sequence 509156 from Patent EP1572962.
JD234032 - Sequence 215056 from Patent EP1572962.
JD455478 - Sequence 436502 from Patent EP1572962.
JD060758 - Sequence 41782 from Patent EP1572962.
JD213913 - Sequence 194937 from Patent EP1572962.
JD201728 - Sequence 182752 from Patent EP1572962.
JD165306 - Sequence 146330 from Patent EP1572962.
JD543007 - Sequence 524031 from Patent EP1572962.
JD213417 - Sequence 194441 from Patent EP1572962.
JD384811 - Sequence 365835 from Patent EP1572962.
JD183313 - Sequence 164337 from Patent EP1572962.
JD356306 - Sequence 337330 from Patent EP1572962.
JD505738 - Sequence 486762 from Patent EP1572962.
JD107508 - Sequence 88532 from Patent EP1572962.
JD189337 - Sequence 170361 from Patent EP1572962.
DQ573860 - Homo sapiens piRNA piR-41972, complete sequence.
JD371775 - Sequence 352799 from Patent EP1572962.
JD251736 - Sequence 232760 from Patent EP1572962.
JD485491 - Sequence 466515 from Patent EP1572962.
JD483324 - Sequence 464348 from Patent EP1572962.
JD205493 - Sequence 186517 from Patent EP1572962.
JD565003 - Sequence 546027 from Patent EP1572962.
JD147160 - Sequence 128184 from Patent EP1572962.
JD413864 - Sequence 394888 from Patent EP1572962.
JD200444 - Sequence 181468 from Patent EP1572962.
JD313876 - Sequence 294900 from Patent EP1572962.
DQ575842 - Homo sapiens piRNA piR-43954, complete sequence.
JD450688 - Sequence 431712 from Patent EP1572962.
JD100497 - Sequence 81521 from Patent EP1572962.
JD150653 - Sequence 131677 from Patent EP1572962.
JD247284 - Sequence 228308 from Patent EP1572962.
JD539011 - Sequence 520035 from Patent EP1572962.
JD467098 - Sequence 448122 from Patent EP1572962.
JD228778 - Sequence 209802 from Patent EP1572962.
JD523047 - Sequence 504071 from Patent EP1572962.
JD070044 - Sequence 51068 from Patent EP1572962.
JD072142 - Sequence 53166 from Patent EP1572962.
JD242895 - Sequence 223919 from Patent EP1572962.
JD064618 - Sequence 45642 from Patent EP1572962.
JD312067 - Sequence 293091 from Patent EP1572962.
JD346557 - Sequence 327581 from Patent EP1572962.
JD272964 - Sequence 253988 from Patent EP1572962.
JD425254 - Sequence 406278 from Patent EP1572962.
JD506078 - Sequence 487102 from Patent EP1572962.
JD342585 - Sequence 323609 from Patent EP1572962.
JD213602 - Sequence 194626 from Patent EP1572962.
JD562380 - Sequence 543404 from Patent EP1572962.
JD266012 - Sequence 247036 from Patent EP1572962.
JD494690 - Sequence 475714 from Patent EP1572962.
JD290410 - Sequence 271434 from Patent EP1572962.
JD259701 - Sequence 240725 from Patent EP1572962.
JD152956 - Sequence 133980 from Patent EP1572962.
JD527547 - Sequence 508571 from Patent EP1572962.
JD160747 - Sequence 141771 from Patent EP1572962.
JD295677 - Sequence 276701 from Patent EP1572962.
JD281396 - Sequence 262420 from Patent EP1572962.
JD491985 - Sequence 473009 from Patent EP1572962.
JD513461 - Sequence 494485 from Patent EP1572962.
JD355283 - Sequence 336307 from Patent EP1572962.
JD535568 - Sequence 516592 from Patent EP1572962.
JD478418 - Sequence 459442 from Patent EP1572962.
JD463630 - Sequence 444654 from Patent EP1572962.
JD229553 - Sequence 210577 from Patent EP1572962.
JD262219 - Sequence 243243 from Patent EP1572962.
JD454026 - Sequence 435050 from Patent EP1572962.
JD398628 - Sequence 379652 from Patent EP1572962.
JD341501 - Sequence 322525 from Patent EP1572962.
JD476736 - Sequence 457760 from Patent EP1572962.
JD414849 - Sequence 395873 from Patent EP1572962.
JD311826 - Sequence 292850 from Patent EP1572962.
JD081626 - Sequence 62650 from Patent EP1572962.
JD081628 - Sequence 62652 from Patent EP1572962.
JD081627 - Sequence 62651 from Patent EP1572962.
JD502811 - Sequence 483835 from Patent EP1572962.
JD045055 - Sequence 26079 from Patent EP1572962.
JD293678 - Sequence 274702 from Patent EP1572962.
JD555572 - Sequence 536596 from Patent EP1572962.
JD566574 - Sequence 547598 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A1B0GUK7, ENST00000533004.1, ENST00000533004.2, ENST00000533004.3, ENST00000533004.4, NM_001381875, uc003yzl.1, uc003yzl.2, uc003yzl.3
UCSC ID: ENST00000533004.5
RefSeq Accession: NM_001381875

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.