Human Gene CAAP1 (ENST00000333916.8) from GENCODE V44
  Description: Homo sapiens caspase activity and apoptosis inhibitor 1 (CAAP1), transcript variant 1, mRNA. (from RefSeq NM_024828)
Gencode Transcript: ENST00000333916.8
Gencode Gene: ENSG00000120159.13
Transcript (Including UTRs)
   Position: hg38 chr9:26,840,685-26,892,802 Size: 52,118 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg38 chr9:26,842,301-26,892,715 Size: 50,415 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:26,840,685-26,892,802)mRNA (may differ from genome)Protein (361 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CAAP1_HUMAN
DESCRIPTION: RecName: Full=Caspase activity and apoptosis inhibitor 1; AltName: Full=Conserved anti-apoptotic protein; Short=CAAP;
FUNCTION: Anti-apoptotic protein that modulates a caspase-10 dependent mitochondrial caspase-3/9 feedback amplification loop.
TISSUE SPECIFICITY: Ubiquitous.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.39 RPKM in Thyroid
Total median expression: 254.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.9087-0.344 Picture PostScript Text
3' UTR -327.601616-0.203 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q9H8G2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0006915 apoptotic process
GO:0042981 regulation of apoptotic process


-  Descriptions from all associated GenBank mRNAs
  BC071953 - Homo sapiens chromosome 9 open reading frame 82, mRNA (cDNA clone MGC:88643 IMAGE:5431506), complete cds.
BC014658 - Homo sapiens chromosome 9 open reading frame 82, mRNA (cDNA clone MGC:20431 IMAGE:4648932), complete cds.
AK023719 - Homo sapiens cDNA FLJ13657 fis, clone PLACE1011563.
AK301673 - Homo sapiens cDNA FLJ50267 complete cds.
AK300739 - Homo sapiens cDNA FLJ50744 complete cds.
HQ447530 - Synthetic construct Homo sapiens clone IMAGE:100070869; CCSB014949_01 chromosome 9 open reading frame 82 (C9orf82) gene, encodes complete protein.
AB590748 - Synthetic construct DNA, clone: pFN21AE1845, Homo sapiens C9orf82 gene for chromosome 9 open reading frame 82, without stop codon, in Flexi system.
CU687198 - Synthetic construct Homo sapiens gateway clone IMAGE:100023157 5' read C9orf82 mRNA.
AF131768 - Homo sapiens clone 25114 mRNA sequence.
JD167323 - Sequence 148347 from Patent EP1572962.
JD538756 - Sequence 519780 from Patent EP1572962.
JD024409 - Sequence 5433 from Patent EP1572962.
JD028411 - Sequence 9435 from Patent EP1572962.
JD364739 - Sequence 345763 from Patent EP1572962.
JD116599 - Sequence 97623 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DWT4, C9orf82, CAAP, CAAP1_HUMAN, D3DRK4, ENST00000333916.1, ENST00000333916.2, ENST00000333916.3, ENST00000333916.4, ENST00000333916.5, ENST00000333916.6, ENST00000333916.7, NM_024828, Q5VY32, Q6IPE6, Q96C59, Q9H8G2, uc003zqc.1, uc003zqc.2, uc003zqc.3, uc003zqc.4, uc003zqc.5
UCSC ID: ENST00000333916.8
RefSeq Accession: NM_024828
Protein: Q9H8G2 (aka CAAP1_HUMAN)
CCDS: CCDS6516.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.