Human Gene ZFAND5 (ENST00000376960.8) from GENCODE V44
  Description: Homo sapiens zinc finger AN1-type containing 5 (ZFAND5), transcript variant c, mRNA. (from RefSeq NM_006007)
Gencode Transcript: ENST00000376960.8
Gencode Gene: ENSG00000107372.13
Transcript (Including UTRs)
   Position: hg38 chr9:72,354,458-72,365,235 Size: 10,778 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg38 chr9:72,355,953-72,360,778 Size: 4,826 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:72,354,458-72,365,235)mRNA (may differ from genome)Protein (213 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtOMIM
PubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZFAN5_HUMAN
DESCRIPTION: RecName: Full=AN1-type zinc finger protein 5; AltName: Full=Zinc finger A20 domain-containing protein 2; AltName: Full=Zinc finger protein 216;
FUNCTION: Involved in protein degradation via the ubiquitin- proteasome system. May act by anchoring ubiquitinated proteins to the proteasome. Plays a role in ubiquitin-mediated protein degradation during muscle atrophy. Plays a role in the regulation of NF-kappa-B activation and apoptosis. Inhibits NF-kappa-B activation triggered by overexpression of RIPK1 and TRAF6 but not of RELA. Inhibits also tumor necrosis factor (TNF), IL-1 and TLR4- induced NF-kappa-B activation in a dose-dependent manner. Overexpression sensitizes cells to TNF-induced apoptosis. Is a potent inhibitory factor for osteoclast differentiation.
SUBUNIT: Interacts with ubiquitin and polyubiquitinated proteins. Identified in a heterotrimeric complex with ubiquitin and SQSTM1, where ZFAND5 and SQSTM1 both interact with the same ubiquitin molecule (By similarity). Homooligomer and/or heterooligomer. Interacts (via A20-type domain) with IKBKG and RIPK1 and with TRAF6 (via AN1-type domain).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Highly expressed in skeletal muscle. Expressed in fetal cochlea. Also expressed in infant brain, fetal heart, pancreatic islet, melanocyte, pineal gland, placenta, corneal stroma, and parathyroid tumor. Weakly expressed or undetectable in adult brain, heart, colon, thymus, spleen, kidney, liver, small intestine, placenta, lung and peripheral blood leukocytes. Expressed in rhabdomyosarcoma RD cells (at protein level).
DOMAIN: The A20-type zinc finger directly binds polyubiquitin chains and associates with the 26S proteasome. The zinc-finger A20-type domain is essential for inhibition of NF-kappa-B activation (By similarity).
SIMILARITY: Contains 1 A20-type zinc finger.
SIMILARITY: Contains 1 AN1-type zinc finger.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 110.27 RPKM in Nerve - Tibial
Total median expression: 2034.67 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -270.40549-0.493 Picture PostScript Text
3' UTR -345.301495-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002653 - Znf_A20
IPR000058 - Znf_AN1

Pfam Domains:
PF01754 - A20-like zinc finger
PF01428 - AN1-like Zinc finger

ModBase Predicted Comparative 3D Structure on O76080
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding

Biological Process:
GO:0001701 in utero embryonic development
GO:0001944 vasculature development
GO:0003016 respiratory system process
GO:0008150 biological_process
GO:0010761 fibroblast migration
GO:0048008 platelet-derived growth factor receptor signaling pathway
GO:0048705 skeletal system morphogenesis
GO:0048745 smooth muscle tissue development
GO:0060324 face development

Cellular Component:
GO:0005575 cellular_component
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF211276 - JP 2014500723-A/18779: Polycomb-Associated Non-Coding RNAs.
MA446853 - JP 2018138019-A/18779: Polycomb-Associated Non-Coding RNAs.
KJ897781 - Synthetic construct Homo sapiens clone ccsbBroadEn_07175 ZFAND5 gene, encodes complete protein.
BX649046 - Homo sapiens mRNA; cDNA DKFZp779D0520 (from clone DKFZp779D0520).
BX648551 - Homo sapiens mRNA; cDNA DKFZp779J1631 (from clone DKFZp779J1631).
DM107606 - METHODS FOR GENERATING NEW HAIR FOLLICLES, TREATING BALDNESS, AND HAIR REMOVAL.
HW120610 - JP 2013049691-A/165: METHODS FOR GENERATING NEW HAIR FOLLICLES, TREATING BALDNESS, AND HAIR REMOVAL.
LF858713 - JP 2015172074-A/165: METHODS FOR GENERATING NEW HAIR FOLLICLES, TREATING BALDNESS, AND HAIR REMOVAL.
MA726063 - JP 2017114907-A/165: METHODS FOR GENERATING NEW HAIR FOLLICLES, TREATING BALDNESS, AND HAIR REMOVAL.
AF062347 - Homo sapiens zinc finger protein 216 splice variant 2 (ZNF216) mRNA, complete cds.
AK025782 - Homo sapiens cDNA: FLJ22129 fis, clone HEP19575, highly similar to AF062347 Homo sapiens zinc finger protein 216 splice variant 2 (ZNF216) mRNA.
BC073131 - Homo sapiens zinc finger, AN1-type domain 5, mRNA (cDNA clone MGC:87987 IMAGE:6137219), complete cds.
AF062346 - Homo sapiens zinc finger protein 216 splice variant 1 (ZNF216) mRNA, complete cds.
LF345158 - JP 2014500723-A/152661: Polycomb-Associated Non-Coding RNAs.
MA580735 - JP 2018138019-A/152661: Polycomb-Associated Non-Coding RNAs.
JD260472 - Sequence 241496 from Patent EP1572962.
JD288169 - Sequence 269193 from Patent EP1572962.
JD292875 - Sequence 273899 from Patent EP1572962.
JD281178 - Sequence 262202 from Patent EP1572962.
JD317291 - Sequence 298315 from Patent EP1572962.
JD091727 - Sequence 72751 from Patent EP1572962.
JD072815 - Sequence 53839 from Patent EP1572962.
AK290849 - Homo sapiens cDNA FLJ78280 complete cds, highly similar to Homo sapiens zinc finger, A20 domain containing 2 (ZA20D2), mRNA.
AK307376 - Homo sapiens cDNA, FLJ97324.
BC011018 - Homo sapiens zinc finger, AN1-type domain 5, mRNA (cDNA clone MGC:13526 IMAGE:4331933), complete cds.
JD316022 - Sequence 297046 from Patent EP1572962.
JD048240 - Sequence 29264 from Patent EP1572962.
JD499032 - Sequence 480056 from Patent EP1572962.
JD502641 - Sequence 483665 from Patent EP1572962.
X75687 - H.sapiens (TL7) mRNA from LNCaP cell line.
BC027707 - Homo sapiens zinc finger, AN1-type domain 5, mRNA (cDNA clone MGC:10350 IMAGE:3945047), complete cds.
EU446731 - Synthetic construct Homo sapiens clone IMAGE:100069969; IMAGE:100011940; FLH257136.01L zinc finger, AN1-type domain 5 (ZFAND5) gene, encodes complete protein.
AB464419 - Synthetic construct DNA, clone: pF1KB7270, Homo sapiens ZFAND5 gene for zinc finger, AN1-type domain containing protein 5, without stop codon, in Flexi system.
LF345157 - JP 2014500723-A/152660: Polycomb-Associated Non-Coding RNAs.
MA580734 - JP 2018138019-A/152660: Polycomb-Associated Non-Coding RNAs.
JD502558 - Sequence 483582 from Patent EP1572962.
LF345156 - JP 2014500723-A/152659: Polycomb-Associated Non-Coding RNAs.
MA580733 - JP 2018138019-A/152659: Polycomb-Associated Non-Coding RNAs.
LF345155 - JP 2014500723-A/152658: Polycomb-Associated Non-Coding RNAs.
MA580732 - JP 2018138019-A/152658: Polycomb-Associated Non-Coding RNAs.
JD100619 - Sequence 81643 from Patent EP1572962.
LF345150 - JP 2014500723-A/152653: Polycomb-Associated Non-Coding RNAs.
MA580727 - JP 2018138019-A/152653: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K484, ENST00000376960.1, ENST00000376960.2, ENST00000376960.3, ENST00000376960.4, ENST00000376960.5, ENST00000376960.6, ENST00000376960.7, NM_006007, O76080, uc004aiy.1, uc004aiy.2, uc004aiy.3, ZA20D2, ZFAN5_HUMAN, ZNF216
UCSC ID: ENST00000376960.8
RefSeq Accession: NM_001102421
Protein: O76080 (aka ZFAN5_HUMAN)
CCDS: CCDS6642.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.