Human Gene MBTPS2 (ENST00000365779.2) from GENCODE V44
  Description: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. (from UniProt B9ZVQ3)
RefSeq Summary (NM_015884): This gene encodes a intramembrane zinc metalloprotease, which is essential in development. This protease functions in the signal protein activation involved in sterol control of transcription and the ER stress response. Mutations in this gene have been associated with ichthyosis follicularis with atrichia and photophobia (IFAP syndrome); IFAP syndrome has been quantitatively linked to a reduction in cholesterol homeostasis and ER stress response.[provided by RefSeq, Aug 2009].
Gencode Transcript: ENST00000365779.2
Gencode Gene: ENSG00000012174.12
Transcript (Including UTRs)
   Position: hg38 chrX:21,839,654-21,873,084 Size: 33,431 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg38 chrX:21,839,735-21,869,701 Size: 29,967 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:21,839,654-21,873,084)mRNA (may differ from genome)Protein (330 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
LynxMalacardsMGIPubMedUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: B9ZVQ3_HUMAN
DESCRIPTION: SubName: Full=Membrane-bound transcription factor site-2 protease;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MBTPS2
Diseases sorted by gene-association score: ifap syndrome with or without bresheck syndrome* (1580), olmsted syndrome, x-linked* (1379), keratosis follicularis spinulosa decalvans, x-linked* (1331), keratosis follicularis spinulosa decalvans* (803), olmsted syndrome* (274), ichthyosis follicularis atrichia photophobia syndrome* (100), keratosis (52), autonomic peripheral neuropathy (17), alopecia (14), corneal degeneration (13), blepharitis (13), ichthyosis (11), amyloidosis, hereditary, transthyretin-related (9), megacolon (8), ectropion (6), nail disorder, nonsyndromic congenital, 1 (6), hair disease (5), tyrosinemia, type ii (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.27 RPKM in Cells - Cultured fibroblasts
Total median expression: 110.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -40.1081-0.495 Picture PostScript Text
3' UTR -733.303383-0.217 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001193 - Pept_M50_SREBP
IPR008915 - Peptidase_M50

Pfam Domains:
PF02163 - Peptidase family M50

ModBase Predicted Comparative 3D Structure on B9ZVQ3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity

Biological Process:
GO:0006508 proteolysis

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK292933 - Homo sapiens cDNA FLJ75833 complete cds, highly similar to Homo sapiens membrane-bound transcription factor peptidase, site 2 (MBTPS2), mRNA.
AF019612 - Homo sapiens S2P mRNA, complete cds.
BC036465 - Homo sapiens membrane-bound transcription factor peptidase, site 2, mRNA (cDNA clone IMAGE:5261621), with apparent retained intron.
BC012905 - Homo sapiens membrane-bound transcription factor peptidase, site 2, mRNA (cDNA clone IMAGE:3881297), with apparent retained intron.
JD072733 - Sequence 53757 from Patent EP1572962.
AK312474 - Homo sapiens cDNA, FLJ92832.
JD150629 - Sequence 131653 from Patent EP1572962.
AB385581 - Synthetic construct DNA, clone: pF1KB9454, Homo sapiens MBTPS2 gene for membrane-bound transcription factor site-2 protease, complete cds, without stop codon, in Flexi system.
CU690354 - Synthetic construct Homo sapiens gateway clone IMAGE:100018118 5' read MBTPS2 mRNA.
KJ902587 - Synthetic construct Homo sapiens clone ccsbBroadEn_11981 MBTPS2 gene, encodes complete protein.
KR709527 - Synthetic construct Homo sapiens clone CCSBHm_00002951 MBTPS2 (MBTPS2) mRNA, encodes complete protein.
KR709528 - Synthetic construct Homo sapiens clone CCSBHm_00002952 MBTPS2 (MBTPS2) mRNA, encodes complete protein.
KR709529 - Synthetic construct Homo sapiens clone CCSBHm_00002953 MBTPS2 (MBTPS2) mRNA, encodes complete protein.
AK307143 - Homo sapiens cDNA, FLJ97091.
FJ423751 - Homo sapiens MBTPS2/YY2 fusion mRNA, partial sequence.
JD411940 - Sequence 392964 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_s1pPathway - SREBP control of lipid synthesis

-  Other Names for This Gene
  Alternate Gene Symbols: B9ZVQ3, B9ZVQ3_HUMAN, BC036465, ENST00000365779.1, uc004dab.1, uc004dab.2, uc004dab.3
UCSC ID: ENST00000365779.2
RefSeq Accession: NM_015884
Protein: B9ZVQ3

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.