Human Gene NUDT7 (ENST00000268533.9) from GENCODE V44
  Description: Homo sapiens nudix hydrolase 7 (NUDT7), transcript variant 1, mRNA. (from RefSeq NM_001105663)
RefSeq Summary (NM_001105663): The protein encoded by this gene is a member of the Nudix hydrolase family. Nudix hydrolases eliminate potentially toxic nucleotide metabolites from the cell and regulate the concentrations and availability of many different nucleotide substrates, cofactors, and signaling molecules. Alternatively spliced transcript variants encoding multiple isoforms have been found for this gene. [provided by RefSeq, Aug 2011].
Gencode Transcript: ENST00000268533.9
Gencode Gene: ENSG00000140876.11
Transcript (Including UTRs)
   Position: hg38 chr16:77,722,514-77,742,260 Size: 19,747 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg38 chr16:77,722,583-77,741,950 Size: 19,368 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:77,722,514-77,742,260)mRNA (may differ from genome)Protein (238 aa)
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OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NUDT7_HUMAN
DESCRIPTION: RecName: Full=Peroxisomal coenzyme A diphosphatase NUDT7; EC=3.6.1.-; AltName: Full=Nucleoside diphosphate-linked moiety X motif 7; Short=Nudix motif 7;
FUNCTION: Coenzyme A diphosphatase which mediates the cleavage of CoA, CoA esters and oxidized CoA with similar efficiencies, yielding 3',5'-ADP and the corresponding 4'-phosphopantetheine derivative as products. CoA into 3',5'-ADP and 4'- phosphopantetheine. Has no activity toward NDP-sugars, CDP- alcohols, (deoxy)nucleoside 5'-triphosphates, nucleoside 5'-di or monophosphates, diadenosine polyphosphates, NAD, NADH, NADP, NADPH or thymidine-5'-monophospho-p-nitrophenyl ester. May be required to eliminate oxidized CoA from peroxisomes, or regulate CoA and acyl-CoA levels in this organelle in response to metabolic demand (By similarity).
COFACTOR: Manganese or magnesium (By similarity).
ENZYME REGULATION: Inhibited by fluoride (By similarity).
SUBCELLULAR LOCATION: Peroxisome (By similarity).
TISSUE SPECIFICITY: Expressed in liver, kidney, pancreas, pituitary, small intestine, spleen, heart and placenta. Weakly expressed in brain.
SIMILARITY: Belongs to the Nudix hydrolase family. PCD1 subfamily.
SIMILARITY: Contains 1 nudix hydrolase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NUDT7
Diseases sorted by gene-association score: neurodegeneration with brain iron accumulation 1 (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.66 RPKM in Liver
Total median expression: 218.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.4069-0.296 Picture PostScript Text
3' UTR -53.10310-0.171 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000086 - NUDIX_hydrolase_dom
IPR015797 - NUDIX_hydrolase_dom-like
IPR000059 - NUDIX_hydrolase_NudL_CS

Pfam Domains:
PF00293 - NUDIX domain

ModBase Predicted Comparative 3D Structure on P0C024
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologGenome BrowserGenome Browser
Gene Details    Gene Details
Gene Sorter    Gene Sorter
MGI Ensembl WormBaseSGD
Protein SequenceProtein SequenceProtein Sequence Protein SequenceProtein Sequence
AlignmentAlignmentAlignment AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000287 magnesium ion binding
GO:0003674 molecular_function
GO:0003723 RNA binding
GO:0003986 acetyl-CoA hydrolase activity
GO:0005102 receptor binding
GO:0016289 CoA hydrolase activity
GO:0016787 hydrolase activity
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030145 manganese ion binding
GO:0030515 snoRNA binding
GO:0046872 metal ion binding
GO:0050072 m7G(5')pppN diphosphatase activity

Biological Process:
GO:0006625 protein targeting to peroxisome
GO:0008150 biological_process
GO:0009062 fatty acid catabolic process
GO:0009132 nucleoside diphosphate metabolic process
GO:0015938 coenzyme A catabolic process
GO:0046356 acetyl-CoA catabolic process
GO:0050873 brown fat cell differentiation

Cellular Component:
GO:0005777 peroxisome
GO:0005782 peroxisomal matrix
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK026469 - Homo sapiens cDNA: FLJ22816 fis, clone KAIA3155.
AK296963 - Homo sapiens cDNA FLJ60020 complete cds, moderately similar to Peroxisomal coenzyme A diphosphatase NUDT7(EC 3.6.1.-).
BC172303 - Synthetic construct Homo sapiens clone IMAGE:100068997, MGC:199008 nudix (nucleoside diphosphate linked moiety X)-type motif 7 (NUDT7) mRNA, encodes complete protein.
EU981826 - Homo sapiens peroxisomal coenzyme A diphosphatase variant 2 (NUDT7) mRNA, complete cds, alternatively spliced.
JD371529 - Sequence 352553 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P0C024 (Reactome details) participates in the following event(s):

R-HSA-6809354 NUDT7 hydrolyses CoA-SH to 3',5'-ADP and PPANT
R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-9033241 Peroxisomal protein import
R-HSA-390918 Peroxisomal lipid metabolism
R-HSA-392499 Metabolism of proteins
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000268533.1, ENST00000268533.2, ENST00000268533.3, ENST00000268533.4, ENST00000268533.5, ENST00000268533.6, ENST00000268533.7, ENST00000268533.8, NM_001105663, NUDT7_HUMAN, P0C024, uc010chd.1, uc010chd.2, uc010chd.3, uc010chd.4
UCSC ID: ENST00000268533.9
RefSeq Accession: NM_001105663
Protein: P0C024 (aka NUDT7_HUMAN)
CCDS: CCDS42195.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.