Human Gene NPSR1-AS1 (ENST00000428922.5) from GENCODE V44
  Description: NPSR1 antisense RNA 1 (from HGNC NPSR1-AS1)
RefSeq Summary (NR_015356): This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010].
Gencode Transcript: ENST00000428922.5
Gencode Gene: ENSG00000197085.11
Transcript (Including UTRs)
   Position: hg38 chr7:34,703,850-34,761,191 Size: 57,342 Total Exon Count: 3 Strand: -


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:34,703,850-34,761,191)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGencodeHGNCLynxMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NPSR1-AS1
Diseases sorted by gene-association score: asthma (4)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.06 RPKM in Kidney - Cortex
Total median expression: 0.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX649082 - Homo sapiens mRNA; cDNA DKFZp779O055 (from clone DKFZp779O055).
AY312368 - Homo sapiens AAA1 variant IV mRNA, complete cds; alternatively spliced.
AY312369 - Homo sapiens AAA1 variant V mRNA, complete cds; alternatively spliced.
AY321516 - Homo sapiens AAA1 variant XI mRNA, complete cds.
AY312370 - Homo sapiens AAA1 variant VI mRNA, complete cds; alternatively spliced.
U85653 - Homo sapiens clone 232823 unknown mRNA, partial sequence.
AY312367 - Homo sapiens AAA1 variant III mRNA, complete cds; alternatively spliced.
AY312371 - Homo sapiens AAA1 variant VII mRNA, complete cds; alternatively spliced.
BC130477 - Homo sapiens asthma-associated alternatively spliced gene 1, mRNA (cDNA clone IMAGE:40146508).
AY312372 - Homo sapiens AAA1 variant VIII mRNA, complete cds; alternatively spliced.
AY312366 - Homo sapiens AAA1 variant II mRNA, complete cds; alternatively spliced.
AY312373 - Homo sapiens AAA1 variant IX mRNA, complete cds; alternatively spliced.
AY321515 - Homo sapiens AAA1 variant X mRNA, complete cds.
AY312364 - Homo sapiens AAA1 variant IA mRNA, complete cds; alternatively spliced.
AY312365 - Homo sapiens AAA1 variant IB mRNA, complete sequence; alternatively spliced.
BC031961 - Homo sapiens AAA1 protein, mRNA (cDNA clone IMAGE:4827585).

-  Other Names for This Gene
  Alternate Gene Symbols: AY321515, ENST00000428922.1, ENST00000428922.2, ENST00000428922.3, ENST00000428922.4, uc010kwx.1, uc010kwx.2
UCSC ID: ENST00000428922.5
RefSeq Accession: NR_015356

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.