Human Gene ARHGAP22 (ENST00000435790.6) from GENCODE V44
  Description: Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), transcript variant 10, mRNA. (from RefSeq NM_001347738)
RefSeq Summary (NM_001256025): This gene encodes a member of the GTPase activating protein family which activates a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues. The result of these interactions is regulation of cell motility. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011].
Gencode Transcript: ENST00000435790.6
Gencode Gene: ENSG00000128805.15
Transcript (Including UTRs)
   Position: hg38 chr10:48,446,242-48,652,616 Size: 206,375 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr10:48,446,391-48,652,285 Size: 205,895 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:48,446,242-48,652,616)mRNA (may differ from genome)Protein (704 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RHG22_HUMAN
DESCRIPTION: RecName: Full=Rho GTPase-activating protein 22; AltName: Full=Rho-type GTPase-activating protein 22;
FUNCTION: Rho GTPase-activating protein involved in the signal transduction pathway that regulates endothelial cell capillary tube formation during angiogenesis. Acts as a GTPase activator for the RAC1 by converting it to an inactive GDP-bound state. Inhibits RAC1-dependent lamellipodia formation. May also play a role in transcription regulation via its interaction with VEZF1, by regulating activity of the endothelin-1 (EDN1) promoter (By similarity).
SUBUNIT: Interacts with VEZF1 (By similarity).
INTERACTION: O00555:CACNA1A; NbExp=2; IntAct=EBI-3866859, EBI-766279;
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity). Note=Mainly cytoplasmic. Some fraction is nuclear (By similarity).
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 Rho-GAP domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D001564 Benzo(a)pyrene
  • D008748 Methylcholanthrene
  • C517041 (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II)
  • C010914 2,4-diaminotoluene
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • C027576 4-hydroxy-2-nonenal
  • D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide
  • D015127 9,10-Dimethyl-1,2-benzanthracene
  • D000082 Acetaminophen
  • D019256 Cadmium Chloride
          more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.03 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 74.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.90331-0.205 Picture PostScript Text
3' UTR -49.00149-0.329 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology
IPR008936 - Rho_GTPase_activation_prot
IPR000198 - RhoGAP_dom

Pfam Domains:
PF00169 - PH domain
PF00620 - RhoGAP domain

ModBase Predicted Comparative 3D Structure on Q7Z5H3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding

Biological Process:
GO:0001525 angiogenesis
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007165 signal transduction
GO:0007275 multicellular organism development
GO:0030154 cell differentiation
GO:0043547 positive regulation of GTPase activity
GO:0051056 regulation of small GTPase mediated signal transduction

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005925 focal adhesion


-  Descriptions from all associated GenBank mRNAs
  AY324801 - Homo sapiens Rho GTPase activating protein 2 mRNA, complete cds.
LF384976 - JP 2014500723-A/192479: Polycomb-Associated Non-Coding RNAs.
MA620553 - JP 2018138019-A/192479: Polycomb-Associated Non-Coding RNAs.
BC047096 - Homo sapiens Rho GTPase activating protein 22, mRNA (cDNA clone IMAGE:5303623).
AK055037 - Homo sapiens cDNA FLJ30475 fis, clone BRAWH1000130, highly similar to Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), mRNA.
AK293579 - Homo sapiens cDNA FLJ56006 complete cds, highly similar to Homo sapiens Rho GTPase activating protein 22 (ARHGAP22), mRNA.
EF560749 - Homo sapiens clone IMAGp958B082492 ARHGAP22 protein (ARHGAP22) mRNA, complete cds.
BC126444 - Homo sapiens Rho GTPase activating protein 22, mRNA (cDNA clone MGC:161722 IMAGE:8992160), complete cds.
BC136319 - Homo sapiens Rho GTPase activating protein 22, mRNA (cDNA clone MGC:167929 IMAGE:9020306), complete cds.
HQ258357 - Synthetic construct Homo sapiens clone IMAGE:100072666 Rho GTPase activating protein 22 (ARHGAP22) gene, encodes complete protein.
KJ899386 - Synthetic construct Homo sapiens clone ccsbBroadEn_08780 ARHGAP22-like gene, encodes complete protein.
KJ903022 - Synthetic construct Homo sapiens clone ccsbBroadEn_12416 ARHGAP22 gene, encodes complete protein.
AB385228 - Synthetic construct DNA, clone: pF1KB9470, Homo sapiens ARHGAP22 gene for Rho GTPase-activating protein 22, complete cds, without stop codon, in Flexi system.
AK055937 - Homo sapiens cDNA FLJ31375 fis, clone NB9N42000495.
U90908 - Human clones 23549 and 23762 mRNA, complete cds.
AK127586 - Homo sapiens cDNA FLJ45681 fis, clone ERLTF2002369.
JD336985 - Sequence 318009 from Patent EP1572962.
JD206411 - Sequence 187435 from Patent EP1572962.
JD518152 - Sequence 499176 from Patent EP1572962.
JD318805 - Sequence 299829 from Patent EP1572962.
JD239480 - Sequence 220504 from Patent EP1572962.
JD224358 - Sequence 205382 from Patent EP1572962.
LF333878 - JP 2014500723-A/141381: Polycomb-Associated Non-Coding RNAs.
MA569455 - JP 2018138019-A/141381: Polycomb-Associated Non-Coding RNAs.
LF333877 - JP 2014500723-A/141380: Polycomb-Associated Non-Coding RNAs.
MA569454 - JP 2018138019-A/141380: Polycomb-Associated Non-Coding RNAs.
LF333876 - JP 2014500723-A/141379: Polycomb-Associated Non-Coding RNAs.
MA569453 - JP 2018138019-A/141379: Polycomb-Associated Non-Coding RNAs.
AK097151 - Homo sapiens cDNA FLJ39832 fis, clone SPLEN2013648.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q7Z5H3 (Reactome details) participates in the following event(s):

R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-194840 Rho GTPase cycle
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A0AVP7, A5YM75, B9EGA0, ENST00000435790.1, ENST00000435790.2, ENST00000435790.3, ENST00000435790.4, ENST00000435790.5, NM_001347738, O00152, Q6ZSB0, Q7Z5H3, RHG22_HUMAN, RHOGAP2, uc010qgm.1, uc010qgm.2, uc010qgm.3, uc010qgm.4
UCSC ID: ENST00000435790.6
RefSeq Accession: NM_001256025
Protein: Q7Z5H3 (aka RHG22_HUMAN)
CCDS: CCDS7227.1, CCDS58080.1, CCDS58081.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.