Human Gene HSPH1 (ENST00000445273.6) from GENCODE V44
  Description: Homo sapiens heat shock protein family H (Hsp110) member 1 (HSPH1), transcript variant 4, mRNA. (from RefSeq NM_001286505)
RefSeq Summary (NM_001286505): This gene encodes a member of the heat shock protein 70 family of proteins. The encoded protein functions as a nucleotide exchange factor for the molecular chaperone heat shock cognate 71 kDa protein (Hsc70). In addition, this protein plays a distinct but related role as a holdase that inhibits the aggregation of misfolded proteins, including the cystic fibrosis transmembrane conductance regulator (CFTR) protein. Elevated expression of this protein has been observed in numerous human cancers. [provided by RefSeq, Mar 2017].
Gencode Transcript: ENST00000445273.6
Gencode Gene: ENSG00000120694.20
Transcript (Including UTRs)
   Position: hg38 chr13:31,134,974-31,162,388 Size: 27,415 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg38 chr13:31,137,318-31,162,094 Size: 24,777 Coding Exon Count: 16 

Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:31,134,974-31,162,388)mRNA (may differ from genome)Protein (782 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HSPH1
Diseases sorted by gene-association score: cystic fibrosis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.13 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 1212.55 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -115.10294-0.391 Picture PostScript Text
3' UTR -568.602344-0.243 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC037553 - Homo sapiens heat shock 105kDa/110kDa protein 1, mRNA (cDNA clone MGC:40320 IMAGE:4540927), complete cds.
BX648125 - Homo sapiens mRNA; cDNA DKFZp686G2440 (from clone DKFZp686G2440).
AF039695 - Homo sapiens antigen NY-CO-25 (NY-CO-25) mRNA, partial cds.
AB003333 - Homo sapiens HSP105 beta mRNA, complete cds.
AB003334 - Homo sapiens HSP105 alpha mRNA, complete cds.
D86956 - Homo sapiens mRNA for KIAA0201 gene.
JD298426 - Sequence 279450 from Patent EP1572962.
JD188148 - Sequence 169172 from Patent EP1572962.
JD357626 - Sequence 338650 from Patent EP1572962.
AK302430 - Homo sapiens cDNA FLJ52364 complete cds, highly similar to Heat-shock protein 105 kDa.
JD156748 - Sequence 137772 from Patent EP1572962.
BC018124 - Homo sapiens heat shock 105kDa/110kDa protein 1, mRNA (cDNA clone IMAGE:3913339), partial cds.
AK293955 - Homo sapiens cDNA FLJ55325 complete cds, highly similar to Heat-shock protein 105 kDa.
BX648623 - Homo sapiens mRNA; cDNA DKFZp686M05240 (from clone DKFZp686M05240).
JD059386 - Sequence 40410 from Patent EP1572962.
JD358871 - Sequence 339895 from Patent EP1572962.
JD537655 - Sequence 518679 from Patent EP1572962.
AK302294 - Homo sapiens cDNA FLJ52360 complete cds, highly similar to Heat-shock protein 105 kDa.
JD358581 - Sequence 339605 from Patent EP1572962.
DQ891727 - Synthetic construct clone IMAGE:100004357; FLH179456.01X; RZPDo839G09130D heat shock 105kDa/110kDa protein 1 (HSPH1) gene, encodes complete protein.
AK314576 - Homo sapiens cDNA, FLJ95408.
KJ893137 - Synthetic construct Homo sapiens clone ccsbBroadEn_02531 HSPH1 gene, encodes complete protein.
AB383796 - Synthetic construct DNA, clone: pF1KSDA0201, Homo sapiens HSPH1 gene for heat shock protein 105 kDa, complete cds, without stop codon, in Flexi system.
DQ894904 - Synthetic construct Homo sapiens clone IMAGE:100009364; FLH179452.01L; RZPDo839G09129D heat shock 105kDa/110kDa protein 1 (HSPH1) gene, encodes complete protein.
AK302832 - Homo sapiens cDNA FLJ51707 complete cds, highly similar to Heat-shock protein 105 kDa.
AK303029 - Homo sapiens cDNA FLJ50428 complete cds, moderately similar to Heat-shock protein 105 kDa.
CU691504 - Synthetic construct Homo sapiens gateway clone IMAGE:100017827 5' read HSPH1 mRNA.
AK307597 - Homo sapiens cDNA, FLJ97545.
AK311464 - Homo sapiens cDNA, FLJ18506.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0A0MSM0, ENST00000445273.1, ENST00000445273.2, ENST00000445273.3, ENST00000445273.4, ENST00000445273.5, NM_001286505, uc010tds.1, uc010tds.2, uc010tds.3
UCSC ID: ENST00000445273.6
RefSeq Accession: NM_001286505
CCDS: CCDS73559.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.