Human Gene NUDT14 (ENST00000392568.7) from GENCODE V44
  Description: Homo sapiens nudix hydrolase 14 (NUDT14), transcript variant 1, mRNA. (from RefSeq NM_177533)
RefSeq Summary (NM_177533): The protein encoded by this gene is a member of the Nudix hydrolase family. Nudix hydrolases eliminate potentially toxic nucleotide metabolites from the cell and regulate the concentrations and availability of many different nucleotide substrates, cofactors, and signaling molecules. This enzyme contains a Nudix hydrolase domain and is a UDPG pyrophosphatase that hydrolyzes UDPG to produce glucose 1-phosphate and UMP. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2016].
Gencode Transcript: ENST00000392568.7
Gencode Gene: ENSG00000183828.15
Transcript (Including UTRs)
   Position: hg38 chr14:105,172,939-105,181,312 Size: 8,374 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg38 chr14:105,173,021-105,181,209 Size: 8,189 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:105,172,939-105,181,312)mRNA (may differ from genome)Protein (222 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtOMIM
PubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NUD14_HUMAN
DESCRIPTION: RecName: Full=Uridine diphosphate glucose pyrophosphatase; Short=UDPG pyrophosphatase; Short=UGPPase; EC=3.6.1.45; AltName: Full=Nucleoside diphosphate-linked moiety X motif 14; Short=Nudix motif 14;
FUNCTION: Hydrolyzes UDP-glucose to glucose 1-phosphate and UMP and ADP-ribose to ribose 5-phosphate and AMP. The physiological substrate is probably UDP-glucose. Poor activity on other substrates such as ADP-glucose, CDP-glucose, GDP-glucose and GDP- mannose.
CATALYTIC ACTIVITY: UDP-sugar + H(2)O = UMP + alpha-D-aldose 1- phosphate.
COFACTOR: Magnesium.
BIOPHYSICOCHEMICAL PROPERTIES: pH dependence: Optimum pH is 8.0-9.5;
SUBUNIT: Homodimer.
INTERACTION: P10398:ARAF; NbExp=3; IntAct=EBI-536866, EBI-365961;
SUBCELLULAR LOCATION: Cytoplasm.
SIMILARITY: Belongs to the Nudix hydrolase family.
SIMILARITY: Contains 1 nudix hydrolase domain.
SEQUENCE CAUTION: Sequence=AAD15563.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 40.25 RPKM in Pituitary
Total median expression: 480.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.80103-0.513 Picture PostScript Text
3' UTR -18.7082-0.228 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004385 - NDP_pyrophosphatase
IPR000086 - NUDIX_hydrolase_dom
IPR015797 - NUDIX_hydrolase_dom-like

Pfam Domains:
PF00293 - NUDIX domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3Q91 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O95848
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsemblWormBase 
Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence 
AlignmentAlignmentAlignmentAlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008768 UDP-sugar diphosphatase activity
GO:0016787 hydrolase activity
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0047631 ADP-ribose diphosphatase activity

Biological Process:
GO:0018279 protein N-linked glycosylation via asparagine

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB087802 - Homo sapiens UGPP mRNA for uridine diphosphate glucose pyrophosphatase, complete cds.
BC041584 - Homo sapiens nudix (nucleoside diphosphate linked moiety X)-type motif 14, mRNA (cDNA clone MGC:52411 IMAGE:4810207), complete cds.
AK128196 - Homo sapiens cDNA FLJ46324 fis, clone TESTI4043223, highly similar to Uridine diphosphate glucose pyrophosphatase (EC 3.6.1.45).
HQ257983 - Synthetic construct Homo sapiens clone IMAGE:100072292 nudix (nucleoside diphosphate linked moiety X)-type motif 14 (NUDT14) (NUDT14) gene, encodes complete protein.
KJ895919 - Synthetic construct Homo sapiens clone ccsbBroadEn_05313 NUDT14 gene, encodes complete protein.
AK310449 - Homo sapiens cDNA, FLJ17491.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O95848 (Reactome details) participates in the following event(s):

R-HSA-6810464 NUDT14 hydrolyses UDP-Glc to G1P and UMP
R-HSA-480985 Synthesis of dolichyl-phosphate-glucose
R-HSA-446219 Synthesis of substrates in N-glycan biosythesis
R-HSA-446193 Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000392568.1, ENST00000392568.2, ENST00000392568.3, ENST00000392568.4, ENST00000392568.5, ENST00000392568.6, NM_177533, NUD14_HUMAN, O95848, Q86SJ8, uc010tyn.1, uc010tyn.2, uc010tyn.3, uc010tyn.4, uc010tyn.5, UGPP
UCSC ID: ENST00000392568.7
RefSeq Accession: NM_177533
Protein: O95848 (aka NUD14_HUMAN or NU14_HUMAN)
CCDS: CCDS10000.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.