Human Gene GRAMD1A (ENST00000317991.10) from GENCODE V44
Description: Homo sapiens GRAM domain containing 1A (GRAMD1A), transcript variant 1, mRNA. (from RefSeq NM_020895)
Gencode Transcript: ENST00000317991.10
Gencode Gene: ENSG00000089351.15
Transcript (Including UTRs)
Position: hg38 chr19:35,000,323-35,026,469 Size: 26,147 Total Exon Count: 20 Strand: +
Coding Region
Position: hg38 chr19:35,000,479-35,026,141 Size: 25,663 Coding Exon Count: 20
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: GRM1A_HUMAN
DESCRIPTION: RecName: Full=GRAM domain-containing protein 1A;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).SIMILARITY: Contains 1 GRAM domain.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR004182 - GRAM
Pfam Domains: PF02893 - GRAM domain
ModBase Predicted Comparative 3D Structure on Q96CP6
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF207616 - JP 2014500723-A/15119: Polycomb-Associated Non-Coding RNAs.MA443193 - JP 2018138019-A/15119: Polycomb-Associated Non-Coding RNAs.AK097215 - Homo sapiens cDNA FLJ39896 fis, clone SPLEN2016972.AK074864 - Homo sapiens cDNA FLJ90383 fis, clone NT2RP2005163.BC014077 - Homo sapiens GRAM domain containing 1A, mRNA (cDNA clone MGC:20455 IMAGE:4126671), complete cds.JD399639 - Sequence 380663 from Patent EP1572962.AK074914 - Homo sapiens cDNA FLJ90433 fis, clone NT2RP3000721.AB384616 - Synthetic construct DNA, clone: pF1KA1533, Homo sapiens GRAMD1A gene for GRAM domain-containing protein 1A, complete cds, without stop codon, in Flexi system.JD176830 - Sequence 157854 from Patent EP1572962.JD037193 - Sequence 18217 from Patent EP1572962.LF367460 - JP 2014500723-A/174963: Polycomb-Associated Non-Coding RNAs.MA603037 - JP 2018138019-A/174963: Polycomb-Associated Non-Coding RNAs.JD532142 - Sequence 513166 from Patent EP1572962.JD189948 - Sequence 170972 from Patent EP1572962.JD112207 - Sequence 93231 from Patent EP1572962.JD170522 - Sequence 151546 from Patent EP1572962.LF367459 - JP 2014500723-A/174962: Polycomb-Associated Non-Coding RNAs.MA603036 - JP 2018138019-A/174962: Polycomb-Associated Non-Coding RNAs.JD150266 - Sequence 131290 from Patent EP1572962.JD230681 - Sequence 211705 from Patent EP1572962.JD054609 - Sequence 35633 from Patent EP1572962.AB040966 - Homo sapiens mRNA for KIAA1533 protein, partial cds.CU680766 - Synthetic construct Homo sapiens gateway clone IMAGE:100018388 5' read GRAMD1A mRNA.AK074827 - Homo sapiens cDNA FLJ90346 fis, clone NT2RP2002976.LF367458 - JP 2014500723-A/174961: Polycomb-Associated Non-Coding RNAs.MA603035 - JP 2018138019-A/174961: Polycomb-Associated Non-Coding RNAs.LF367457 - JP 2014500723-A/174960: Polycomb-Associated Non-Coding RNAs.MA603034 - JP 2018138019-A/174960: Polycomb-Associated Non-Coding RNAs.LF367456 - JP 2014500723-A/174959: Polycomb-Associated Non-Coding RNAs.MA603033 - JP 2018138019-A/174959: Polycomb-Associated Non-Coding RNAs.LF367454 - JP 2014500723-A/174957: Polycomb-Associated Non-Coding RNAs.MA603031 - JP 2018138019-A/174957: Polycomb-Associated Non-Coding RNAs.LF367453 - JP 2014500723-A/174956: Polycomb-Associated Non-Coding RNAs.MA603030 - JP 2018138019-A/174956: Polycomb-Associated Non-Coding RNAs.AK026064 - Homo sapiens cDNA: FLJ22411 fis, clone HRC08456.BC041618 - Homo sapiens GRAM domain containing 1A, mRNA (cDNA clone IMAGE:5921205).LF367452 - JP 2014500723-A/174955: Polycomb-Associated Non-Coding RNAs.MA603029 - JP 2018138019-A/174955: Polycomb-Associated Non-Coding RNAs.LF367451 - JP 2014500723-A/174954: Polycomb-Associated Non-Coding RNAs.MA603028 - JP 2018138019-A/174954: Polycomb-Associated Non-Coding RNAs.LF367450 - JP 2014500723-A/174953: Polycomb-Associated Non-Coding RNAs.MA603027 - JP 2018138019-A/174953: Polycomb-Associated Non-Coding RNAs.AK093555 - Homo sapiens cDNA FLJ36236 fis, clone THYMU2001357.JD100353 - Sequence 81377 from Patent EP1572962.JD355036 - Sequence 336060 from Patent EP1572962.JD189845 - Sequence 170869 from Patent EP1572962.JD135233 - Sequence 116257 from Patent EP1572962.JD534661 - Sequence 515685 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A6NKY7, ENST00000317991.1, ENST00000317991.2, ENST00000317991.3, ENST00000317991.4, ENST00000317991.5, ENST00000317991.6, ENST00000317991.7, ENST00000317991.8, ENST00000317991.9, GRM1A_HUMAN, KIAA1533, NM_020895, Q8NC77, Q96CP6, Q9P1Z5, uc010xse.1, uc010xse.2, uc010xse.3UCSC ID: ENST00000317991.10RefSeq Accession: NM_020895
Protein: Q96CP6
(aka GRM1A_HUMAN)
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.