Human Gene ATP1A3 (ENST00000543770.5) from GENCODE V44
  Description: Homo sapiens ATPase Na+/K+ transporting subunit alpha 3 (ATP1A3), transcript variant 2, mRNA. (from RefSeq NM_001256213)
RefSeq Summary (NM_001256213): The protein encoded by this gene belongs to the family of P-type cation transport ATPases, and to the subfamily of Na+/K+ -ATPases. Na+/K+ -ATPase is an integral membrane protein responsible for establishing and maintaining the electrochemical gradients of Na and K ions across the plasma membrane. These gradients are essential for osmoregulation, for sodium-coupled transport of a variety of organic and inorganic molecules, and for electrical excitability of nerve and muscle. This enzyme is composed of two subunits, a large catalytic subunit (alpha) and a smaller glycoprotein subunit (beta). The catalytic subunit of Na+/K+ -ATPase is encoded by multiple genes. This gene encodes an alpha 3 subunit. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2012].
Gencode Transcript: ENST00000543770.5
Gencode Gene: ENSG00000105409.19
Transcript (Including UTRs)
   Position: hg38 chr19:41,966,621-41,993,467 Size: 26,847 Total Exon Count: 23 Strand: -
Coding Region
   Position: hg38 chr19:41,966,937-41,993,431 Size: 26,495 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:41,966,621-41,993,467)mRNA (may differ from genome)Protein (1024 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCLynxMalacardsMGImyGene2neXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AT1A3_HUMAN
DESCRIPTION: RecName: Full=Sodium/potassium-transporting ATPase subunit alpha-3; Short=Na(+)/K(+) ATPase alpha-3 subunit; EC=3.6.3.9; AltName: Full=Na(+)/K(+) ATPase alpha(III) subunit; AltName: Full=Sodium pump subunit alpha-3;
FUNCTION: This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.
CATALYTIC ACTIVITY: ATP + H(2)O + Na(+)(In) + K(+)(Out) = ADP + phosphate + Na(+)(Out) + K(+)(In).
SUBUNIT: Composed of three subunits: alpha (catalytic), beta and gamma.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
DISEASE: Defects in ATP1A3 are the cause of dystonia type 12 (DYT12) [MIM:128235]; also known as rapid-onset dystonia parkinsonism (RDP). DYT12 is an autosomal dominant dystonia- parkinsonism disorder. Dystonia is defined by the presence of sustained involuntary muscle contractions, often leading to abnormal postures. DYT12 patients develop dystonia and parkinsonism between 15 and 45 years of age. The disease is characterized by an unusually rapid evolution of signs and symptoms. The sudden onset of symptoms over hours to a few weeks, often associated with physical or emotional stress, suggests a trigger initiating a nervous system insult resulting in permanent neurologic disability.
SIMILARITY: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIC subfamily.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ATP1A3";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ATP1A3
Diseases sorted by gene-association score: dystonia-12* (1703), capos syndrome* (1668), alternating hemiplegia of childhood 2* (1231), atp1a3-related alternating hemiplegia of childhood* (500), hemiplegia* (449), cerebellar ataxia, areflexia, pes cavus, optic atrophy and sensorinural hearing loss* (400), alternating hemiplegia of childhood* (355), hydrocephalus, nonsyndromic, autosomal recessive 2* (283), hydrocephalus, nonsyndromic, autosomal recessive* (283), hydrocephalus* (200), seizure disorder* (83), visual epilepsy* (78), dystonia (20), hemiplegic migraine (16), movement disease (12), familial hemiplegic migraine (12), hemidystonia (11), retinoschisis (11), dystonia-parkinsonism, x-linked (10), quadriplegia (9), multifocal dystonia (8), dystonia, dopa-responsive, with or without hyperphenylalaninemia (6), sensorineural hearing loss (5), cerebellar ataxia (5), dystonia-11, myoclonic (4), optic atrophy plus syndrome (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 174.40 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 1432.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.9036-0.358 Picture PostScript Text
3' UTR -63.40316-0.201 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023306 - ATPase_cation_domN
IPR008250 - ATPase_P-typ_ATPase-assoc-dom
IPR005775 - ATPase_P-typ_cation-ex_asu_euk
IPR006069 - ATPase_P-typ_cation-exchng_asu
IPR006068 - ATPase_P-typ_cation-transptr_C
IPR004014 - ATPase_P-typ_cation-transptr_N
IPR023300 - ATPase_P-typ_cyto_domA
IPR023299 - ATPase_P-typ_cyto_domN
IPR001757 - ATPase_P-typ_ion-transptr
IPR018303 - ATPase_P-typ_P_site
IPR023298 - ATPase_P-typ_TM_dom
IPR005834 - Dehalogen-like_hydro
IPR023214 - HAD-like_dom

Pfam Domains:
PF00689 - Cation transporting ATPase, C-terminus
PF00690 - Cation transporter/ATPase, N-terminus
PF00122 - E1-E2 ATPase
PF00702 - haloacid dehalogenase-like hydrolase

ModBase Predicted Comparative 3D Structure on P13637
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0001540 beta-amyloid binding
GO:0005391 sodium:potassium-exchanging ATPase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0051087 chaperone binding
GO:1990239 steroid hormone binding

Biological Process:
GO:0006811 ion transport
GO:0006813 potassium ion transport
GO:0006814 sodium ion transport
GO:0006883 cellular sodium ion homeostasis
GO:0010107 potassium ion import
GO:0010248 establishment or maintenance of transmembrane electrochemical gradient
GO:0030007 cellular potassium ion homeostasis
GO:0036376 sodium ion export from cell
GO:0060075 regulation of resting membrane potential
GO:0071383 cellular response to steroid hormone stimulus
GO:0086064 cell communication by electrical coupling involved in cardiac conduction
GO:1903416 response to glycoside
GO:1904646 cellular response to beta-amyloid
GO:1990535 neuron projection maintenance

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005890 sodium:potassium-exchanging ATPase complex
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030424 axon
GO:0032809 neuronal cell body membrane
GO:0043025 neuronal cell body
GO:0045202 synapse
GO:1903561 extracellular vesicle


-  Descriptions from all associated GenBank mRNAs
  AL832884 - Homo sapiens mRNA; cDNA DKFZp667L223 (from clone DKFZp667L223).
BC009282 - Homo sapiens ATPase, Na+/K+ transporting, alpha 3 polypeptide, mRNA (cDNA clone MGC:14215 IMAGE:4125669), complete cds.
BC009394 - Homo sapiens ATPase, Na+/K+ transporting, alpha 3 polypeptide, mRNA (cDNA clone MGC:16769 IMAGE:4135506), complete cds.
BC015566 - Homo sapiens ATPase, Na+/K+ transporting, alpha 3 polypeptide, mRNA (cDNA clone MGC:13276 IMAGE:4097948), complete cds.
AK054736 - Homo sapiens cDNA FLJ30174 fis, clone BRACE2000975, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
AK295833 - Homo sapiens cDNA FLJ59543 complete cds, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
AK295078 - Homo sapiens cDNA FLJ59513 complete cds, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
BC013763 - Homo sapiens ATPase, Na+/K+ transporting, alpha 3 polypeptide, mRNA (cDNA clone IMAGE:3874001), with apparent retained intron.
AK094628 - Homo sapiens cDNA FLJ37309 fis, clone BRAMY2016611, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
AK122693 - Homo sapiens cDNA FLJ16157 fis, clone BRAWH2006479, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
AK296557 - Homo sapiens cDNA FLJ54717 complete cds, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
JD253720 - Sequence 234744 from Patent EP1572962.
JD418533 - Sequence 399557 from Patent EP1572962.
JD392108 - Sequence 373132 from Patent EP1572962.
JD413126 - Sequence 394150 from Patent EP1572962.
JD516099 - Sequence 497123 from Patent EP1572962.
JD306865 - Sequence 287889 from Patent EP1572962.
JD120400 - Sequence 101424 from Patent EP1572962.
JD290299 - Sequence 271323 from Patent EP1572962.
JD466254 - Sequence 447278 from Patent EP1572962.
JD381483 - Sequence 362507 from Patent EP1572962.
JD146902 - Sequence 127926 from Patent EP1572962.
AK316069 - Homo sapiens cDNA, FLJ78968 complete cds, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
AK223569 - Homo sapiens mRNA for Na+/K+ -ATPase alpha 3 subunit variant, clone: FCC129A02.
JD560583 - Sequence 541607 from Patent EP1572962.
AK293784 - Homo sapiens cDNA FLJ59485 complete cds, highly similar to Sodium/potassium-transporting ATPase alpha-3 chain (EC 3.6.3.9).
JF432325 - Synthetic construct Homo sapiens clone IMAGE:100073511 ATPase, Na+/K+ transporting, alpha 3 polypeptide (ATP1A3) gene, encodes complete protein.
KJ896471 - Synthetic construct Homo sapiens clone ccsbBroadEn_05865 ATP1A3 gene, encodes complete protein.
KR710322 - Synthetic construct Homo sapiens clone CCSBHm_00011479 ATP1A3 (ATP1A3) mRNA, encodes complete protein.
KR710323 - Synthetic construct Homo sapiens clone CCSBHm_00011480 ATP1A3 (ATP1A3) mRNA, encodes complete protein.
KR710324 - Synthetic construct Homo sapiens clone CCSBHm_00011482 ATP1A3 (ATP1A3) mRNA, encodes complete protein.
AK307921 - Homo sapiens cDNA, FLJ97869.
CU679343 - Synthetic construct Homo sapiens gateway clone IMAGE:100020523 5' read ATP1A3 mRNA.
AY946015 - Homo sapiens Na+/K+ transporting ATPase alpha 3 polypeptide (ATP1A3) mRNA, partial cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04260 - Cardiac muscle contraction
hsa04960 - Aldosterone-regulated sodium reabsorption
hsa04964 - Proximal tubule bicarbonate reclamation

Reactome (by CSHL, EBI, and GO)

Protein P13637 (Reactome details) participates in the following event(s):

R-HSA-936897 ATP1A:ATP1B:FXYD exchanges Na+ for K+
R-HSA-936837 Ion transport by P-type ATPases
R-HSA-5578775 Ion homeostasis
R-HSA-983712 Ion channel transport
R-HSA-5576891 Cardiac conduction
R-HSA-382551 Transport of small molecules
R-HSA-397014 Muscle contraction

-  Other Names for This Gene
  Alternate Gene Symbols: AT1A3_HUMAN, ENST00000543770.1, ENST00000543770.2, ENST00000543770.3, ENST00000543770.4, NM_001256213, P13637, Q16732, Q16735, Q969K5, uc010xwf.1, uc010xwf.2, uc010xwf.3
UCSC ID: ENST00000543770.5
RefSeq Accession: NM_001256213
Protein: P13637 (aka AT1A3_HUMAN or A1A3_HUMAN)
CCDS: CCDS12594.1, CCDS58663.1, CCDS58664.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ATP1A3:
ataxias (Hereditary Ataxia Overview)
dystonia-ov (Hereditary Dystonia Overview)
rapid-odp (ATP1A3-Related Neurologic Disorders)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.