Human Gene PLCL2 (ENST00000432376.5) from GENCODE V44
  Description: Homo sapiens phospholipase C like 2 (PLCL2), transcript variant 2, mRNA. (from RefSeq NM_015184)
Gencode Transcript: ENST00000432376.5
Gencode Gene: ENSG00000154822.18
Transcript (Including UTRs)
   Position: hg38 chr3:16,933,090-17,090,593 Size: 157,504 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg38 chr3:17,009,725-17,089,912 Size: 80,188 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:16,933,090-17,090,593)mRNA (may differ from genome)Protein (1001 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGImyGene2neXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PLCL2_HUMAN
DESCRIPTION: RecName: Full=Inactive phospholipase C-like protein 2; Short=PLC-L(2); Short=PLC-L2; Short=Phospholipase C-L2; AltName: Full=Phospholipase C-epsilon-2; Short=PLC-epsilon-2;
FUNCTION: May play an role in the regulation of Ins(1,4,5)P3 around the endoplasmic reticulum (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Note=Predominantly localized to perinuclear areas in both myoblast and myotube C2C12 cells (By similarity).
SIMILARITY: Contains 1 C2 domain.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 PI-PLC X-box domain.
SIMILARITY: Contains 1 PI-PLC Y-box domain.
CAUTION: The PI-PLC X-box lacks the essential His at position 486 which is replaced by a Thr and is predicted to be inactive.
SEQUENCE CAUTION: Sequence=BAA83044.1; Type=Erroneous initiation; Sequence=BAB14606.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.45 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 207.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -73.20253-0.289 Picture PostScript Text
3' UTR -162.40681-0.238 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000008 - C2_Ca-dep
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR018029 - C2_membr_targeting
IPR011992 - EF-hand-like_dom
IPR011993 - PH_like_dom
IPR001192 - Pinositol_PLipase_C
IPR017946 - PLC-like_Pdiesterase_TIM-brl
IPR001849 - Pleckstrin_homology
IPR015359 - PLipase_C_EF-hand-like
IPR000909 - PLipase_C_PInositol-sp_X_dom
IPR001711 - PLipase_C_Pinositol-sp_Y

Pfam Domains:
PF00168 - C2 domain
PF09279 - Phosphoinositide-specific phospholipase C, efhand-like
PF00388 - Phosphatidylinositol-specific phospholipase C, X domain
PF00387 - Phosphatidylinositol-specific phospholipase C, Y domain

ModBase Predicted Comparative 3D Structure on Q9UPR0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004435 phosphatidylinositol phospholipase C activity
GO:0004871 signal transducer activity
GO:0008081 phosphoric diester hydrolase activity
GO:0050811 GABA receptor binding
GO:0070679 inositol 1,4,5 trisphosphate binding

Biological Process:
GO:0002322 B cell proliferation involved in immune response
GO:0002337 B-1a B cell differentiation
GO:0006629 lipid metabolic process
GO:0007165 signal transduction
GO:0007214 gamma-aminobutyric acid signaling pathway
GO:0032228 regulation of synaptic transmission, GABAergic
GO:0033135 regulation of peptidyl-serine phosphorylation
GO:0035556 intracellular signal transduction
GO:0050859 negative regulation of B cell receptor signaling pathway
GO:1900122 positive regulation of receptor binding

Cellular Component:
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK309946 - Homo sapiens cDNA, FLJ99987.
AB029015 - Homo sapiens KIAA1092 mRNA for KIAA1092 protein.
AB384109 - Synthetic construct DNA, clone: pF1KSDA1092, Homo sapiens PLCL2 gene for phospholipase C-like 2, complete cds, without stop codon, in Flexi system.
AK291419 - Homo sapiens cDNA FLJ78651 complete cds, highly similar to Homo sapiens phospholipase C-like 2 (PLCL2), mRNA.
BC036392 - Homo sapiens phospholipase C-like 2, mRNA (cDNA clone MGC:43056 IMAGE:5259033), complete cds.
KJ898464 - Synthetic construct Homo sapiens clone ccsbBroadEn_07858 PLCL2 gene, encodes complete protein.
GQ129425 - Synthetic construct Homo sapiens clone HAIB:100068479; DKFZo004C0934 phospholipase C-like 2 protein (PLCL2) gene, partial cds.
EU832790 - Synthetic construct Homo sapiens clone HAIB:100067819; DKFZo008C0933 phospholipase C-like 2 protein (PLCL2) gene, encodes complete protein.
AK023546 - Homo sapiens cDNA FLJ13484 fis, clone PLACE1003888, weakly similar to 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE DELTA 1 (EC 3.1.4.11).
AL117515 - Homo sapiens mRNA; cDNA DKFZp434L0735 (from clone DKFZp434L0735); partial cds.
JD155423 - Sequence 136447 from Patent EP1572962.
HW906904 - WO 2015037656-A/119: Autophagy-regulating microRNA.
HZ480356 - JP 2015535430-A/862: TERMINALLY MODIFIED RNA.
HZ790287 - JP 2016504050-A/2032: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
JC513019 - Sequence 3272 from Patent WO2014113089.
LF161559 - JP 2016513950-A/1625: Oligomers with improved off-target profile.
LF632731 - WO 2016117582-A/160: miRNA biomarkers for mental disorders.
LQ070607 - Sequence 931 from Patent EP2964234.
MA406005 - WO 2018155427-A/779: A probe with reduced false positive binding, a method to desing the probe, and the use thereof.
MA644108 - JP 2017113010-A/2032: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MA731992 - JP 2017140048-A/862: TERMINALLY MODIFIED RNA.
HZ409165 - JP 2015528002-A/1762: CHIRAL CONTROL.
LG052499 - KR 1020150036642-A/1765: CHIRAL CONTROL.
JD081501 - Sequence 62525 from Patent EP1572962.
JD173733 - Sequence 154757 from Patent EP1572962.
JD359989 - Sequence 341013 from Patent EP1572962.
MA801161 - JP 2018183181-A/2032: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K5V4, ENST00000432376.1, ENST00000432376.2, ENST00000432376.3, ENST00000432376.4, KIAA1092, NM_015184, PLCE2, PLCL2_HUMAN, Q8N498, Q9H8L0, Q9UFP9, Q9UPR0, uc011awd.1, uc011awd.2, uc011awd.3
UCSC ID: ENST00000432376.5
RefSeq Accession: NM_015184
Protein: Q9UPR0 (aka PLCL2_HUMAN)
CCDS: CCDS33713.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.