Human Gene ENSG00000284691 (ENST00000498682.3) from GENCODE V44
  Description: ENSG00000284691 (from geneSymbol)
Gencode Transcript: ENST00000498682.3
Gencode Gene: ENSG00000284691.1
Transcript (Including UTRs)
   Position: hg38 chr7:150,405,146-150,410,249 Size: 5,104 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr7:150,407,612-150,408,223 Size: 612 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:150,405,146-150,410,249)mRNA (may differ from genome)Protein (203 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGencodeGeneCardsMGIPubMed
UniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -102.10200-0.511 Picture PostScript Text
3' UTR -162.20355-0.457 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type

ModBase Predicted Comparative 3D Structure on B7ZLF3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein Sequence     
Alignment     

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding


-  Descriptions from all associated GenBank mRNAs
  AK022764 - Homo sapiens cDNA FLJ12702 fis, clone NT2RP1000767.
AK022851 - Homo sapiens cDNA FLJ12789 fis, clone NT2RP2001947.
LF207131 - JP 2014500723-A/14634: Polycomb-Associated Non-Coding RNAs.
MA442708 - JP 2018138019-A/14634: Polycomb-Associated Non-Coding RNAs.
BC143767 - Homo sapiens cDNA clone MGC:177298 IMAGE:9052281, complete cds.
JD204720 - Sequence 185744 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B7ZLF3, B7ZLF3_HUMAN, ENST00000498682.1, ENST00000498682.2, NM_001395974, uc011kus.1, uc011kus.2, uc011kus.3, uc011kus.4
UCSC ID: ENST00000498682.3
RefSeq Accession: NR_027237
Protein: B7ZLF3

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.