Human Gene ADAM2 (ENST00000521880.5) from GENCODE V44
  Description: Homo sapiens ADAM metallopeptidase domain 2 (ADAM2), transcript variant 3, mRNA. (from RefSeq NM_001278114)
RefSeq Summary (NM_001278114): This gene encodes a member of the ADAM (a disintegrin and metalloprotease domain) family. Members of this family are membrane-anchored proteins structurally related to snake venom disintegrins, and have been implicated in a variety of biological processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis. The encoded protein is a subunit of an integral sperm membrane glycoprotein called fertilin, which plays an important role in sperm-egg interactions. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2013].
Gencode Transcript: ENST00000521880.5
Gencode Gene: ENSG00000104755.16
Transcript (Including UTRs)
   Position: hg38 chr8:39,744,031-39,838,227 Size: 94,197 Total Exon Count: 20 Strand: -
Coding Region
   Position: hg38 chr8:39,744,860-39,838,185 Size: 93,326 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:39,744,031-39,838,227)mRNA (may differ from genome)Protein (672 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCLynxMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: B4DWY7_HUMAN
DESCRIPTION: SubName: Full=Disintegrin and metalloproteinase domain-containing protein 2; SubName: Full=Uncharacterized protein; SubName: Full=cDNA FLJ60930, highly similar to ADAM 2 (A disintegrin and metalloproteinase domain 2);
SIMILARITY: Contains 1 disintegrin domain.
SIMILARITY: Contains 1 peptidase M12B domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.34 RPKM in Testis
Total median expression: 24.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.0042-0.143 Picture PostScript Text
3' UTR -13.1064-0.205 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006586 - ADAM_Cys-rich
IPR001762 - Blood-coag_inhib_Disintegrin
IPR018358 - Disintegrin_CS
IPR024079 - MetalloPept_cat_dom
IPR001590 - Peptidase_M12B
IPR002870 - Peptidase_M12B_N

Pfam Domains:
PF08516 - ADAM cysteine-rich
PF00200 - Disintegrin
PF01562 - Reprolysin family propeptide
PF01421 - Reprolysin (M12B) family zinc metalloprotease

ModBase Predicted Comparative 3D Structure on B4DWY7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0008237 metallopeptidase activity

Biological Process:
GO:0006508 proteolysis
GO:0007229 integrin-mediated signaling pathway
GO:0007338 single fertilization

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  KJ901435 - Synthetic construct Homo sapiens clone ccsbBroadEn_10829 ADAM2 gene, encodes complete protein.
KJ901434 - Synthetic construct Homo sapiens clone ccsbBroadEn_10828 ADAM2 gene, encodes complete protein.
BC034957 - Homo sapiens ADAM metallopeptidase domain 2, mRNA (cDNA clone MGC:26432 IMAGE:4826530), complete cds.
BC064547 - Homo sapiens ADAM metallopeptidase domain 2, mRNA (cDNA clone MGC:74935 IMAGE:5744846), complete cds.
U38805 - Homo sapiens fertilin beta mRNA, complete cds.
U52370 - Human fertilin beta mRNA, complete cds.
X99374 - H.sapiens mRNA for fertilin beta.
AK301734 - Homo sapiens cDNA FLJ60930 complete cds, highly similar to ADAM 2 precursor (A disintegrin and metalloproteinase domain 2).
JD219371 - Sequence 200395 from Patent EP1572962.
AJ133005 - Homo sapiens mRNA for fertilin beta sperm protein.
JD304085 - Sequence 285109 from Patent EP1572962.
DQ891615 - Synthetic construct clone IMAGE:100004245; FLH178654.01X; RZPDo839F07128D ADAM metallopeptidase domain 2 (fertilin beta) (ADAM2) gene, encodes complete protein.
DQ894807 - Synthetic construct Homo sapiens clone IMAGE:100009267; FLH178650.01L; RZPDo839F07127D ADAM metallopeptidase domain 2 (fertilin beta) (ADAM2) gene, encodes complete protein.
CU687896 - Synthetic construct Homo sapiens gateway clone IMAGE:100021776 5' read ADAM2 mRNA.
CU689996 - Synthetic construct Homo sapiens gateway clone IMAGE:100020430 5' read ADAM2 mRNA.
JD503558 - Sequence 484582 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B4DWY7, B4DWY7_HUMAN, ENST00000521880.1, ENST00000521880.2, ENST00000521880.3, ENST00000521880.4, NM_001278114, uc011lck.1, uc011lck.2, uc011lck.3, uc011lck.4
UCSC ID: ENST00000521880.5
RefSeq Accession: NM_001278114
Protein: B4DWY7 CCDS: CCDS64883.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.