Human Gene CITED1 (ENST00000445983.5) from GENCODE V44
  Description: Transcriptional coactivator of the p300/CBP-mediated trancription complex. Enhances SMAD-mediated transcription by strengthening the functional link between the DNA-binding SMAD transcription factors and the p300/CBP transcription coactivator complex. Stimulates estrogen-dependent transactivation activity mediated by estrogen receptors signaling; stabilizes the interaction of estrogen receptor ESR1 and histone acetyltransferase EP300. Positively regulates TGF-beta signaling through its association with the SMAD/p300/CBP-mediated transcriptional coactivator complex. Induces transcription from estrogen-responsive promoters and protection against cell death. Potentiates EGR2-mediated transcriptional activation activity from the ERBB2 promoter. Acts as an inhibitor of osteoblastic mineralization through a cAMP-dependent parathyroid hormone receptor signaling. May play a role in pigmentation of melanocytes. Associates with chromatin to the estrogen-responsive TGF-alpha promoter region in a estrogen-dependent manner. (from UniProt Q99966)
RefSeq Summary (NM_001144885): This gene encodes a member of the CREB-binding protein/p300-interacting transactivator with Asp/Glu-rich C-terminal domain (CITED) family of proteins. The encoded protein, also known as melanocyte-specific gene 1, may function as a transcriptional coactivator and may play a role in pigmentation of melanocytes. Alternatively spliced transcript variants have been described. [provided by RefSeq, Jan 2009].
Gencode Transcript: ENST00000445983.5
Gencode Gene: ENSG00000125931.11
Transcript (Including UTRs)
   Position: hg38 chrX:72,301,640-72,305,914 Size: 4,275 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg38 chrX:72,301,723-72,302,869 Size: 1,147 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:72,301,640-72,305,914)mRNA (may differ from genome)Protein (193 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
HPRDLynxMalacardsMGIneXtProtPubMed
ReactomeUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: CITE1_HUMAN
DESCRIPTION: RecName: Full=Cbp/p300-interacting transactivator 1; AltName: Full=Melanocyte-specific protein 1;
FUNCTION: Transcriptional coactivator of the p300/CBP-mediated trancription complex. Enhances SMAD-mediated transcription by strengthening the functional link between the DNA-binding SMAD transcription factors and the p300/CBP transcription coactivator complex. Stimulates estrogen-dependent transactivation activity mediated by estrogen receptors signaling; stabilizes the interaction of estrogen receptor ESR1 and histone acetyltransferase EP300. Positively regulates TGF-beta signaling through its association with the SMAD/p300/CBP-mediated transcriptional coactivator complex. Induces transcription from estrogen-responsive promoters and protection against cell death. Potentiates EGR2-mediated transcriptional activation activity from the ERBB2 promoter. Acts as an inhibitor of osteoblastic mineralization through a cAMP-dependent parathyroid hormone receptor signaling. May play a role in pigmentation of melanocytes. Associates with chromatin to the estrogen-responsive TGF-alpha promoter region in a estrogen-dependent manner.
SUBUNIT: Interacts (via C-terminus) with CREBBP. Interacts with EGR2 (By similarity). Homodimer. Binds to RBM14. Interacts (via N- terminus) with HSPA8; the interaction suppresses the association of CITED1 with p300/CBP and SMAD-mediated transcription transactivation. Interacts (via C-terminus) with TOX3 (via HGM box); the interaction increases estrogen-response element (ERE)- dependent transcription and protection against cell death. Interacts with ESR1; the interaction occurs in a estrogen- dependent manner (By similarity). Interacts (unphosphorylated form preferentially and via C-terminus) with EP300.
INTERACTION: P03372:ESR1; NbExp=3; IntAct=EBI-2624951, EBI-78473;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Shuttles between the nucleus and the cytoplasm by a nuclear export signal and (NES) in a CRM1-dependent manner.
TISSUE SPECIFICITY: Expressed only in melanocytes and testis.
INDUCTION: Up-regulated by GPR39 in neuronal cells.
PTM: Phosphorylated. Phosphorylation changes in a cell cycle- dependent manner and reduces its transcriptional coactivator activity.
SIMILARITY: Belongs to the CITED family.
SEQUENCE CAUTION: Sequence=N30508; Type=Frameshift; Positions=67;

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: CITED1
Diseases sorted by gene-association score: melanoma (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.91 RPKM in Testis
Total median expression: 42.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -44.20155-0.285 Picture PostScript Text
3' UTR -13.3083-0.160 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007576 - CITED

Pfam Domains:
PF04487 - CITED

ModBase Predicted Comparative 3D Structure on Q99966
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001105 RNA polymerase II transcription coactivator activity
GO:0003682 chromatin binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0042803 protein homodimerization activity
GO:0044212 transcription regulatory region DNA binding
GO:0050693 LBD domain binding
GO:0070410 co-SMAD binding

Biological Process:
GO:0000578 embryonic axis specification
GO:0001570 vasculogenesis
GO:0001656 metanephros development
GO:0001658 branching involved in ureteric bud morphogenesis
GO:0001890 placenta development
GO:0003340 negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0006913 nucleocytoplasmic transport
GO:0006915 apoptotic process
GO:0007179 transforming growth factor beta receptor signaling pathway
GO:0007275 multicellular organism development
GO:0007420 brain development
GO:0008283 cell proliferation
GO:0010628 positive regulation of gene expression
GO:0030154 cell differentiation
GO:0030178 negative regulation of Wnt signaling pathway
GO:0030318 melanocyte differentiation
GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway
GO:0032496 response to lipopolysaccharide
GO:0032868 response to insulin
GO:0034097 response to cytokine
GO:0034341 response to interferon-gamma
GO:0042438 melanin biosynthetic process
GO:0042981 regulation of apoptotic process
GO:0043473 pigmentation
GO:0043524 negative regulation of neuron apoptotic process
GO:0043627 response to estrogen
GO:0045668 negative regulation of osteoblast differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051591 response to cAMP
GO:0060231 mesenchymal to epithelial transition
GO:0060395 SMAD protein signal transduction
GO:0060711 labyrinthine layer development
GO:0060712 spongiotrophoblast layer development
GO:0070555 response to interleukin-1
GO:0070669 response to interleukin-2
GO:0070670 response to interleukin-4
GO:0070741 response to interleukin-6
GO:0071104 response to interleukin-9
GO:0071105 response to interleukin-11
GO:0071107 response to parathyroid hormone
GO:0071559 response to transforming growth factor beta

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  U65092 - Human melanocyte-specific gene 1 (msg1) mRNA, complete cds.
BC004240 - Homo sapiens Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1, mRNA (cDNA clone MGC:10361 IMAGE:3627230), complete cds.
AB451286 - Homo sapiens CITED1 mRNA for Cbp/p300-interacting transactivator 1, complete cds, clone: FLJ08124AAAN.
DQ892984 - Synthetic construct clone IMAGE:100005614; FLH191401.01X; RZPDo839C1077D Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 (CITED1) gene, encodes complete protein.
DQ896232 - Synthetic construct Homo sapiens clone IMAGE:100010692; FLH191397.01L; RZPDo839C1067D Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 (CITED1) gene, encodes complete protein.
AB451418 - Homo sapiens CITED1 mRNA for Cbp/p300-interacting transactivator 1, partial cds, clone: FLJ08124AAAF.
AB464472 - Synthetic construct DNA, clone: pF1KB8885, Homo sapiens CITED1 gene for Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1, without stop codon, in Flexi system.
JD263739 - Sequence 244763 from Patent EP1572962.
JD462814 - Sequence 443838 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99966 (Reactome details) participates in the following event(s):

R-HSA-9008271 CITED1 and EP300 bind ESR1:estrogen:TGFA gene promoter
R-HSA-9023860 Histone acetyltransferases are recruited to the TFF1 gene
R-HSA-8864307 TFAP2 homo- and heterodimers bind CITED and EP300/CREBBP
R-HSA-9018519 Estrogen-dependent gene expression
R-HSA-8866907 Activation of the TFAP2 (AP-2) family of transcription factors
R-HSA-8939211 ESR-mediated signaling
R-HSA-8864260 Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors
R-HSA-9006931 Signaling by Nuclear Receptors
R-HSA-212436 Generic Transcription Pathway
R-HSA-162582 Signal Transduction
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B5BU50, B5BUI2, CITE1_HUMAN, ENST00000445983.1, ENST00000445983.2, ENST00000445983.3, ENST00000445983.4, MSG1, Q99966, U65092, uc011mqd.1, uc011mqd.2, uc011mqd.3
UCSC ID: ENST00000445983.5
RefSeq Accession: NM_001144885
Protein: Q99966 (aka CITE1_HUMAN or CIT1_HUMAN)
CCDS: CCDS14419.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.