Human Gene BATF2 (ENST00000527454.1) from GENCODE V44
  Description: basic leucine zipper ATF-like transcription factor 2 (from HGNC BATF2)
Gencode Transcript: ENST00000527454.1
Gencode Gene: ENSG00000168062.10
Transcript (Including UTRs)
   Position: hg38 chr11:64,987,946-64,990,514 Size: 2,569 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:64,987,946-64,990,514)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerGencodeHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BATF2
Diseases sorted by gene-association score: cercarial dermatitis (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.99 RPKM in Spleen
Total median expression: 77.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK096702 - Homo sapiens cDNA FLJ39383 fis, clone PERIC2000478, weakly similar to Rattus norvegicus Jun dimerization protein 1 (jdp-1) gene.
BC011931 - Homo sapiens cDNA clone IMAGE:4304544, partial cds.
BC012330 - Homo sapiens basic leucine zipper transcription factor, ATF-like 2, mRNA (cDNA clone MGC:20410 IMAGE:4638025), complete cds.
AK092453 - Homo sapiens cDNA FLJ35134 fis, clone PLACE6009228, moderately similar to Basic leucine zipper transcriptional factor ATF-like 2.
AX747553 - Sequence 1078 from Patent EP1308459.
HM134154 - Homo sapiens suppressor of AP-1 regulated by IFN (SARI) mRNA, complete cds.
AK092761 - Homo sapiens cDNA FLJ35442 fis, clone SMINT2003128, moderately similar to Basic leucine zipper transcriptional factor ATF-like 2.
AX747712 - Sequence 1237 from Patent EP1308459.
JD211503 - Sequence 192527 from Patent EP1572962.
JD500002 - Sequence 481026 from Patent EP1572962.
JD068734 - Sequence 49758 from Patent EP1572962.
JD146231 - Sequence 127255 from Patent EP1572962.
JD109520 - Sequence 90544 from Patent EP1572962.
JD388624 - Sequence 369648 from Patent EP1572962.
JD067673 - Sequence 48697 from Patent EP1572962.
JD108538 - Sequence 89562 from Patent EP1572962.
JD339176 - Sequence 320200 from Patent EP1572962.
JD376608 - Sequence 357632 from Patent EP1572962.
JD270795 - Sequence 251819 from Patent EP1572962.
JD536729 - Sequence 517753 from Patent EP1572962.
JD349164 - Sequence 330188 from Patent EP1572962.
JD392823 - Sequence 373847 from Patent EP1572962.
JD526931 - Sequence 507955 from Patent EP1572962.
JD342620 - Sequence 323644 from Patent EP1572962.
JD208026 - Sequence 189050 from Patent EP1572962.
JD470425 - Sequence 451449 from Patent EP1572962.
DQ589261 - Homo sapiens piRNA piR-56373, complete sequence.
JD273924 - Sequence 254948 from Patent EP1572962.
JD343744 - Sequence 324768 from Patent EP1572962.
JD479140 - Sequence 460164 from Patent EP1572962.
JD265777 - Sequence 246801 from Patent EP1572962.
JD392247 - Sequence 373271 from Patent EP1572962.
AK300917 - Homo sapiens cDNA FLJ54822 complete cds.
JD063625 - Sequence 44649 from Patent EP1572962.
JD491896 - Sequence 472920 from Patent EP1572962.
JD354301 - Sequence 335325 from Patent EP1572962.
JD155247 - Sequence 136271 from Patent EP1572962.
JD117776 - Sequence 98800 from Patent EP1572962.
JD271096 - Sequence 252120 from Patent EP1572962.
JD222371 - Sequence 203395 from Patent EP1572962.
JD398004 - Sequence 379028 from Patent EP1572962.
KJ905600 - Synthetic construct Homo sapiens clone ccsbBroadEn_15228 BATF2-like gene, encodes complete protein.
AB463431 - Synthetic construct DNA, clone: pF1KB7562, Homo sapiens BATF2 gene for basic leucine zipper transcription factor, ATF-like 2, without stop codon, in Flexi system.
JD175114 - Sequence 156138 from Patent EP1572962.
JD353456 - Sequence 334480 from Patent EP1572962.
JD318176 - Sequence 299200 from Patent EP1572962.
JD532715 - Sequence 513739 from Patent EP1572962.
JD045395 - Sequence 26419 from Patent EP1572962.
JD497364 - Sequence 478388 from Patent EP1572962.
JD314381 - Sequence 295405 from Patent EP1572962.
JD168432 - Sequence 149456 from Patent EP1572962.
JD073369 - Sequence 54393 from Patent EP1572962.
JD223535 - Sequence 204559 from Patent EP1572962.
JD407274 - Sequence 388298 from Patent EP1572962.
JD045523 - Sequence 26547 from Patent EP1572962.
JD208050 - Sequence 189074 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK092761, uc021qlb.1, uc021qlb.2
UCSC ID: ENST00000527454.1
Representative RNA: AK092761

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.