Human Gene PSME3IP1 (ENST00000566403.5) from GENCODE V44
  Description: PSME3IP1 (from geneSymbol)
Gencode Transcript: ENST00000566403.5
Gencode Gene: ENSG00000172775.18
Transcript (Including UTRs)
   Position: hg38 chr16:57,153,736-57,175,690 Size: 21,955 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg38 chr16:57,167,239-57,173,854 Size: 6,616 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:57,153,736-57,175,690)mRNA (may differ from genome)Protein (81 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGencodeGeneCardsMalacardsMGI
PubMedUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.37 RPKM in Testis
Total median expression: 950.65 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.20167-0.133 Picture PostScript Text
3' UTR -284.60983-0.290 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019331 - Nefa_Nip30_N

Pfam Domains:
PF10187 - N-terminal domain of NEFA-interacting nuclear protein NIP30

ModBase Predicted Comparative 3D Structure on Q6P4H7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK023291 - Homo sapiens cDNA FLJ13229 fis, clone OVARC1000106.
AK025452 - Homo sapiens cDNA: FLJ21799 fis, clone HEP00611.
AF271785 - Homo sapiens CDA018 mRNA, complete cds.
AF212249 - Homo sapiens CDA10 mRNA, complete cds.
AF356585 - Homo sapiens NEFA-interacting nuclear protein NIP30 (NIP30) mRNA, complete cds.
BC071952 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone MGC:88642 IMAGE:6305656), complete cds.
BC063409 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone IMAGE:5211300), complete cds.
JD424735 - Sequence 405759 from Patent EP1572962.
JD354478 - Sequence 335502 from Patent EP1572962.
JD156683 - Sequence 137707 from Patent EP1572962.
JD301429 - Sequence 282453 from Patent EP1572962.
JD450293 - Sequence 431317 from Patent EP1572962.
JD547242 - Sequence 528266 from Patent EP1572962.
JD144978 - Sequence 126002 from Patent EP1572962.
JD501928 - Sequence 482952 from Patent EP1572962.
BC020536 - Homo sapiens NEFA-interacting nuclear protein NIP30, mRNA (cDNA clone MGC:21022 IMAGE:3849620), complete cds.
AL834421 - Homo sapiens mRNA; cDNA DKFZp667A136 (from clone DKFZp667A136).
DQ891689 - Synthetic construct clone IMAGE:100004319; FLH180046.01X; RZPDo839F04132D NEFA-interacting nuclear protein NIP30 (NIP30) gene, encodes complete protein.
KJ894770 - Synthetic construct Homo sapiens clone ccsbBroadEn_04164 FAM192A gene, encodes complete protein.
DQ894983 - Synthetic construct Homo sapiens clone IMAGE:100009443; FLH180043.01L; RZPDo839F04131D NEFA-interacting nuclear protein NIP30 (NIP30) gene, encodes complete protein.
AB528823 - Synthetic construct DNA, clone: pF1KE0417, Homo sapiens NIP30 gene for family with sequence similarity 192, member A, without stop codon, in Flexi system.
AM393111 - Synthetic construct Homo sapiens clone IMAGE:100001874 for hypothetical protein (NIP30 gene).
AM393361 - Synthetic construct Homo sapiens clone IMAGE:100001867 for hypothetical protein (NIP30 gene).
KJ903265 - Synthetic construct Homo sapiens clone ccsbBroadEn_12659 FAM192A gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: BC063409, ENST00000566403.1, ENST00000566403.2, ENST00000566403.3, ENST00000566403.4, FAM192A, NIP30, Q6P4H7, Q6P4H7_HUMAN, uc021tja.1, uc021tja.2
UCSC ID: ENST00000566403.5
RefSeq Accession: NM_001354078
Protein: Q6P4H7

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.