Human Gene SEC11C (ENST00000592774.1) from GENCODE V44
  Description: SEC11 homolog C, signal peptidase complex subunit (from HGNC SEC11C)
Gencode Transcript: ENST00000592774.1
Gencode Gene: ENSG00000166562.9
Transcript (Including UTRs)
   Position: hg38 chr18:59,139,893-59,148,012 Size: 8,120 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:59,139,893-59,148,012)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerGencodeHGNCLynxMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 67.06 RPKM in Pituitary
Total median expression: 879.04 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK314107 - Homo sapiens cDNA, FLJ94795.
AK311213 - Homo sapiens cDNA, FLJ18255.
AF212233 - Homo sapiens microsomal signal peptidase subunit mRNA, complete cds.
AK307127 - Homo sapiens cDNA, FLJ97075.
AK295346 - Homo sapiens cDNA FLJ57851 complete cds, highly similar to Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-).
JD459271 - Sequence 440295 from Patent EP1572962.
BC009703 - Homo sapiens SEC11 homolog C (S. cerevisiae), mRNA (cDNA clone MGC:9299 IMAGE:3895819), complete cds.
CU679449 - Synthetic construct Homo sapiens gateway clone IMAGE:100018007 5' read SEC11C mRNA.
HQ448732 - Synthetic construct Homo sapiens clone IMAGE:100072178; CCSB000094_01 SEC11 homolog C (S. cerevisiae) (SEC11C) gene, encodes complete protein.
KJ895133 - Synthetic construct Homo sapiens clone ccsbBroadEn_04527 SEC11C gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: AK311213, uc021uky.1
UCSC ID: ENST00000592774.1
Representative RNA: AK311213

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.