Human Gene HIPK3 (ENST00000525975.5) from GENCODE V44
  Description: Homo sapiens homeodomain interacting protein kinase 3 (HIPK3), transcript variant 4, mRNA. (from RefSeq NM_001278163)
Gencode Transcript: ENST00000525975.5
Gencode Gene: ENSG00000110422.12
Transcript (Including UTRs)
   Position: hg38 chr11:33,256,672-33,353,568 Size: 96,897 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg38 chr11:33,286,415-33,353,568 Size: 67,154 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:33,256,672-33,353,568)mRNA (may differ from genome)Protein (1194 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCHPRDLynxMGIneXtProtOMIM
PubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HIPK3_HUMAN
DESCRIPTION: RecName: Full=Homeodomain-interacting protein kinase 3; EC=2.7.11.1; AltName: Full=Androgen receptor-interacting nuclear protein kinase; Short=ANPK; AltName: Full=Fas-interacting serine/threonine-protein kinase; Short=FIST; AltName: Full=Homolog of protein kinase YAK1;
FUNCTION: Serine/threonine-protein kinase involved in transcription regulation, apoptosis and steroidogenic gene expression. Phosphorylates JUN and RUNX2. Seems to negatively regulate apoptosis by promoting FADD phosphorylation. Enhances androgen receptor-mediated transcription. May act as a transcriptional corepressor for NK homeodomain transcription factors. The phosphorylation of NR5A1 activates SF1 leading to increased steroidogenic gene expression upon cAMP signaling pathway stimulation. In osteoblasts, supports transcription activation: phosphorylates RUNX2 that synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF- responsive element (OCFRE).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts with Nkx1-2. Interacts with FAS and DAXX. Probably part of a complex consisting of HIPK3, FAS and FADD. Interacts with and stabilizes ligand-bound androgen receptor (AR) (By similarity). Interacts with UBL1/SUMO-1. Binds to NR5A1/SF1, SPEN/MINT and RUNX2.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Overexpressed in multidrug resistant cells. Highly expressed in heart and skeletal muscle, and at lower levels in placenta, pancreas, brain, spleen, prostate, thymus, testis, small intestine, colon and leukocytes. Not found in liver and lung.
PTM: Autophosphorylated, but autophosphorylation is not required for catalytic activity (By similarity).
PTM: May be sumoylated (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. HIPK subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.13 RPKM in Adipose - Subcutaneous
Total median expression: 793.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -14.2083-0.171 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain

ModBase Predicted Comparative 3D Structure on Q9H422
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0009299 mRNA transcription
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0043066 negative regulation of apoptotic process
GO:0043508 negative regulation of JUN kinase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016604 nuclear body
GO:0016605 PML body


-  Descriptions from all associated GenBank mRNAs
  AK315277 - Homo sapiens cDNA, FLJ96289.
AF305239 - Homo sapiens Fas-interacting serine/threonine kinase 3 (FIST3) mRNA, complete cds.
AK293009 - Homo sapiens cDNA FLJ75520 complete cds, highly similar to Synthetic construct Homo sapiens homeodomain interacting protein kinase 3 (HIPK3) mRNA.
AF004849 - Homo sapiens PKY protein kinase mRNA, complete cds.
AB527161 - Synthetic construct DNA, clone: pF1KB7326, Homo sapiens HIPK3 gene for homeodomain interacting protein kinase 3, without stop codon, in Flexi system.
BC146311 - Synthetic construct Homo sapiens clone IMAGE:100015173, MGC:180234 homeodomain interacting protein kinase 3 (HIPK3) mRNA, encodes complete protein.
BC156873 - Synthetic construct Homo sapiens clone IMAGE:100062738, MGC:190601 homeodomain interacting protein kinase 3 (HIPK3) mRNA, encodes complete protein.
Y09306 - H.sapiens mRNA for protein kinase, Dyrk6, partial.
LP730739 - Sequence 4 from Patent EP3261718.
KU921433 - Homo sapiens BCRC-2 bladder cancer related circular RNA, complete sequence.
AY425958 - Homo sapiens HIPK3 mRNA, partial cds, alternatively spliced.
AK304063 - Homo sapiens cDNA FLJ53957 complete cds, highly similar to Homeodomain-interacting protein kinase 3 (EC2.7.11.1).
LF205805 - JP 2014500723-A/13308: Polycomb-Associated Non-Coding RNAs.
MA441382 - JP 2018138019-A/13308: Polycomb-Associated Non-Coding RNAs.
LF348392 - JP 2014500723-A/155895: Polycomb-Associated Non-Coding RNAs.
MA583969 - JP 2018138019-A/155895: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: DYRK6, ENST00000525975.1, ENST00000525975.2, ENST00000525975.3, ENST00000525975.4, FIST3, HIPK3_HUMAN, NM_001278163, O14632, PKY, Q2PBG4, Q2PBG5, Q92632, Q9H422, Q9HAS2, uc031pzm.1, uc031pzm.2
UCSC ID: ENST00000525975.5
RefSeq Accession: NM_001278163
Protein: Q9H422 (aka HIPK3_HUMAN)
CCDS: CCDS7884.1, CCDS41634.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.