Human Gene MIR5006 (ENST00000583027.1) from GENCODE V44
  Description: Homo sapiens microRNA 5006 (MIR5006), microRNA. (from RefSeq NR_049803)
RefSeq Summary (NR_049803): microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage.
Gencode Transcript: ENST00000583027.1
Gencode Gene: ENSG00000284584.1
Transcript (Including UTRs)
   Position: hg38 chr13:41,568,286-41,568,395 Size: 110 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksPrimersMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:41,568,286-41,568,395)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeHGNCLynxPubMed
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC131802 - Homo sapiens KIAA0564, mRNA (cDNA clone IMAGE:40083464), partial cds.
AB590583 - Synthetic construct DNA, clone: pFN21AA0564, Homo sapiens KIAA0564 gene for KIAA0564, without stop codon, in Flexi system.
AB011136 - Homo sapiens mRNA for KIAA0564 protein, partial cds.
AK025432 - Homo sapiens cDNA: FLJ21779 fis, clone HEP00210.
AK308568 - Homo sapiens cDNA, FLJ98609.
HZ409618 - JP 2015528002-A/2215: CHIRAL CONTROL.
LG052952 - KR 1020150036642-A/2218: CHIRAL CONTROL.
LP835217 - Sequence 15 from Patent WO2017108535.
LP939524 - Sequence 15 from Patent EP3184646.
HW906952 - WO 2015037656-A/167: Autophagy-regulating microRNA.
HZ083338 - JP 2015513906-A/695: Stem Cell Microparticles.
HZ437119 - JP 2015529450-A/695: Stem Cell Microparticles.
HZ482056 - JP 2015535430-A/2562: TERMINALLY MODIFIED RNA.
HZ791987 - JP 2016504050-A/3732: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
JC172323 - Sequence 695 from Patent WO2013150303.
JC506089 - Sequence 108 from Patent EP2733219.
JC514719 - Sequence 4972 from Patent WO2014113089.
JC573134 - Sequence 695 from Patent WO2014125276.
JC582822 - Sequence 695 from Patent WO2014125277.
JC737513 - Sequence 108 from Patent WO2014075911.
JE954518 - Sequence 695 from Patent WO2015052526.
JE956271 - Sequence 695 from Patent WO2015052527.
LF138023 - JP 2016507550-A/695: Method of Producing Microparticles.
LF161814 - JP 2016513950-A/1880: Oligomers with improved off-target profile.
LF162988 - JP 2016513095-A/695: Stem Cell Microparticles and miRNA.
LF953740 - JP 2016534103-A/695: Stem Cell Microparticles and miRNA.
LG006085 - KR 1020150004822-A/695: STEM CELL MICROPARTICLES.
LG053781 - KR 1020150059168-A/695: STEM CELL MICROPARTICLES.
LG241020 - KR 1020160035087-A/695: STEM CELL MICROPARTICLES AND MIRNA.
LP835204 - Sequence 2 from Patent WO2017108535.
LP939511 - Sequence 2 from Patent EP3184646.
LQ072307 - Sequence 2631 from Patent EP2964234.
LV471105 - JP 2016534036-A/695: Stem Cell Microparticles and miRNA.
MA405464 - WO 2018155427-A/238: A probe with reduced false positive binding, a method to desing the probe, and the use thereof.
MA645808 - JP 2017113010-A/3732: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MA733692 - JP 2017140048-A/2562: TERMINALLY MODIFIED RNA.
MA802861 - JP 2018183181-A/3732: SIGNAL-SENSOR POLYNUCLEOTIDES FOR THE ALTERATION OF CELLULAR PHENOTYPES.
MP129795 - Sequence 695 from Patent EP3470073.
MP162718 - Sequence 695 from Patent WO2019069093.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_049803, uc031qli.1
UCSC ID: ENST00000583027.1
RefSeq Accession: NR_049803

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.