Mouse Gene 9530002B09Rik (ENSMUST00000024032.3) Description and Page Index
  Description: Mus musculus RIKEN cDNA 9530002B09 gene (9530002B09Rik), mRNA. (from RefSeq NM_023865)
Gencode Transcript: ENSMUST00000024032.3
Gencode Gene: ENSMUSG00000023263.3
Transcript (Including UTRs)
   Position: mm10 chr4:122,689,275-122,705,129 Size: 15,855 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr4:122,689,367-122,702,385 Size: 13,019 Coding Exon Count: 4 

Page IndexSequence and LinksRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:122,689,275-122,705,129)mRNA (may differ from genome)Protein (135 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedStanford SOURCEUniProtKB

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.6092-0.267 Picture PostScript Text
3' UTR -68.10303-0.225 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002472 - Palm_thioest

Pfam Domains:
PF02089 - Palmitoyl protein thioesterase

ModBase Predicted Comparative 3D Structure on Q9EPV7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
      
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0098599 palmitoyl hydrolase activity

Biological Process:
GO:0098734 macromolecule depalmitoylation


-  Descriptions from all associated GenBank mRNAs
  AF319955 - Mus musculus AUMP (Aump) mRNA, complete cds.
AY077734 - Mus musculus palmitoyl protein thioesterase-like protein (Vpp1) mRNA, complete cds.
AK020534 - Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530002B09 product:AUMP (Aump) mRNA, full insert sequence.
BC141507 - Synthetic construct Mus musculus clone IMAGE:100014771, MGC:175520 RIKEN cDNA 9530002B09 gene (9530002B09Rik) mRNA, encodes complete protein.
BC148786 - Synthetic construct Mus musculus clone IMAGE:100015767, MGC:183429 RIKEN cDNA 9530002B09 gene (9530002B09Rik) mRNA, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: Aump, NM_023865, Q9EPV7, Q9EPV7_MOUSE, RP23-332L16.1, RP23-332L16.1-001, uc008uof.1, uc008uof.2
UCSC ID: uc008uof.2
RefSeq Accession: NM_023865
Protein: Q9EPV7 CCDS: CCDS18603.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.