Mouse Gene Cgref1 (ENSMUST00000031051.9) from GENCODE VM30
  Description: Mus musculus cell growth regulator with EF hand domain 1 (Cgref1), transcript variant 1, mRNA. (from RefSeq NM_026770)
Gencode Transcript: ENSMUST00000031051.9
Gencode Gene: ENSMUSG00000029161.9
Transcript (Including UTRs)
   Position: mm39 chr5:31,090,487-31,102,935 Size: 12,449 Total Exon Count: 6 Strand: -
Coding Region
   Position: mm39 chr5:31,090,835-31,093,307 Size: 2,473 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2022-06-02 09:33:23

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:31,090,487-31,102,935)mRNA (may differ from genome)Protein (280 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: E9QPK1_MOUSE
DESCRIPTION: SubName: Full=Cell growth regulator with EF hand domain protein 1;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D000082 Acetaminophen
  • D001564 Benzo(a)pyrene
  • C006253 pirinixic acid
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C019499 2-nitrofluorene
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • C016583 4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone
  • D015127 9,10-Dimethyl-1,2-benzanthracene
  • C547126 AZM551248
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -143.90251-0.573 Picture PostScript Text
3' UTR -120.70348-0.347 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR018247 - EF_Hand_1_Ca_BS
IPR018249 - EF_HAND_2

ModBase Predicted Comparative 3D Structure on E9QPK1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
      
      
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding


-  Descriptions from all associated GenBank mRNAs
  BC023116 - Mus musculus cell growth regulator with EF hand domain 1, mRNA (cDNA clone MGC:28551 IMAGE:4206019), complete cds.
AK003420 - Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110004G24 product:CELL GROWTH REGULATOR RCGR11 homolog [Rattus norvegicus], full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: E9QPK1, E9QPK1_MOUSE, ENSMUST00000031051.1, ENSMUST00000031051.2, ENSMUST00000031051.3, ENSMUST00000031051.4, ENSMUST00000031051.5, ENSMUST00000031051.6, ENSMUST00000031051.7, ENSMUST00000031051.8, NM_026770, uc008wwo.1, uc008wwo.2, uc008wwo.3, uc008wwo.4
UCSC ID: ENSMUST00000031051.9
RefSeq Accession: NM_026770
Protein: E9QPK1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.