Mouse Gene Nfkbid (ENSMUST00000108176.9) from GENCODE VM30
  Description: Nfkbid (from geneSymbol)
Gencode Transcript: ENSMUST00000108176.9
Gencode Gene: ENSMUSG00000036931.16
Transcript (Including UTRs)
   Position: mm39 chr7:30,121,157-30,128,171 Size: 7,015 Total Exon Count: 12 Strand: +
Coding Region
   Position: mm39 chr7:30,121,199-30,127,612 Size: 6,414 Coding Exon Count: 12 

Page IndexSequence and LinksCTDRNA StructureOther SpeciesmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2022-06-02 09:33:23

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:30,121,157-30,128,171)mRNA (may differ from genome)Protein (470 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGeneCardsPubMedUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.8042-0.329 Picture PostScript Text
3' UTR -177.70559-0.318 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  LF196190 - JP 2014500723-A/3693: Polycomb-Associated Non-Coding RNAs.
MA431767 - JP 2018138019-A/3693: Polycomb-Associated Non-Coding RNAs.
AK155969 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830002J06 product:IkappaBNS, full insert sequence.
AK167356 - Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530008F09 product:IkappaBNS, full insert sequence.
AY078069 - Mus musculus IkappaBNS mRNA, complete cds.
BC110633 - Mus musculus nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta, mRNA (cDNA clone MGC:130396 IMAGE:40058047), complete cds.
LF291927 - JP 2014500723-A/99430: Polycomb-Associated Non-Coding RNAs.
MA527504 - JP 2018138019-A/99430: Polycomb-Associated Non-Coding RNAs.
LF291928 - JP 2014500723-A/99431: Polycomb-Associated Non-Coding RNAs.
MA527505 - JP 2018138019-A/99431: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A217FL61, ENSMUST00000108176.1, ENSMUST00000108176.2, ENSMUST00000108176.3, ENSMUST00000108176.4, ENSMUST00000108176.5, ENSMUST00000108176.6, ENSMUST00000108176.7, ENSMUST00000108176.8, uc009gei.1, uc009gei.2, uc009gei.3
UCSC ID: ENSMUST00000108176.9
RefSeq Accession: NM_001360906

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.