Mouse Gene Slc25a21 (ENSMUST00000110680.3) from GENCODE VM33
  Description: Belongs to the mitochondrial carrier family. (from UniProt B6CI26)
Gencode Transcript: ENSMUST00000110680.3
Gencode Gene: ENSMUSG00000035472.15
Transcript (Including UTRs)
   Position: mm39 chr12:56,760,598-57,206,029 Size: 445,432 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm39 chr12:56,760,598-57,206,029 Size: 445,432 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:56,760,598-57,206,029)mRNA (may differ from genome)Protein (305 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsMGIPubMed
SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: B6CI26_MOUSE
DESCRIPTION: SubName: Full=Mitochondrial 2-oxodicarboxylate carrier; SubName: Full=Mitochondrial solute carrier family 25 member 21;
SIMILARITY: Belongs to the mitochondrial carrier family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

ModBase Predicted Comparative 3D Structure on B6CI26
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK167535 - Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:I530019A21 product:solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21, full insert sequence.
AK045180 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130044A15 product:MOTOCHONDRIAL OXODICARBOXYLATE CARRIER homolog [Rattus norvegicus], full insert sequence.
AK041694 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630030I10 product:MOTOCHONDRIAL OXODICARBOXYLATE CARRIER homolog [Rattus norvegicus], full insert sequence.
AK162379 - Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230119I19 product:solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21, full insert sequence.
AK036988 - Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930033G19 product:MOTOCHONDRIAL OXODICARBOXYLATE CARRIER homolog [Rattus norvegicus], full insert sequence.
EU180236 - Mus musculus mitochondrial solute carrier family 25 member 21 (Slc25a21) mRNA, complete cds, alternatively spliced; nuclear gene for mitochondrial product.
BC057980 - Mus musculus solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21, mRNA (cDNA clone MGC:67702 IMAGE:5042653), complete cds.
AK044945 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130014P16 product:MOTOCHONDRIAL OXODICARBOXYLATE CARRIER homolog [Rattus norvegicus], full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B6CI26, B6CI26_MOUSE, ENSMUST00000110680.1, ENSMUST00000110680.2, EU180236, uc288gmz.1, uc288gmz.2
UCSC ID: ENSMUST00000110680.3
RefSeq Accession: NM_001167976
Protein: B6CI26

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.