Mouse Gene Baz2b (ENSMUST00000112550.8) from GENCODE VM30
  Description: Mus musculus bromodomain adjacent to zinc finger domain, 2B (Baz2b), mRNA. (from RefSeq NM_001001182)
Gencode Transcript: ENSMUST00000112550.8
Gencode Gene: ENSMUSG00000026987.17
Transcript (Including UTRs)
   Position: mm39 chr2:59,729,707-59,956,041 Size: 226,335 Total Exon Count: 35 Strand: -
Coding Region
   Position: mm39 chr2:59,730,993-59,836,531 Size: 105,539 Coding Exon Count: 34 

Page IndexSequence and LinksCTDRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2022-06-02 09:33:23

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:59,729,707-59,956,041)mRNA (may differ from genome)Protein (2123 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
Stanford SOURCEUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -75.70237-0.319 Picture PostScript Text
3' UTR -317.901286-0.247 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001487 - Bromodomain
IPR018359 - Bromodomain_CS
IPR004022 - DDT_dom
IPR018500 - DDT_dom_subgr
IPR018501 - DDT_dom_superfamily
IPR016177 - DNA-bd_integrase-typ
IPR001739 - Methyl_CpG_DNA-bd
IPR011011 - Znf_FYVE_PHD
IPR001965 - Znf_PHD
IPR019787 - Znf_PHD-finger
IPR013083 - Znf_RING/FYVE/PHD

Pfam Domains:
PF00439 - Bromodomain
PF02791 - DDT domain
PF01429 - Methyl-CpG binding domain
PF00628 - PHD-finger

ModBase Predicted Comparative 3D Structure on A2AUY4
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0003677 DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0008150 biological_process

Cellular Component:
GO:0005575 cellular_component
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  BC150814 - Mus musculus bromodomain adjacent to zinc finger domain, 2B, mRNA (cDNA clone MGC:183725 IMAGE:9087725), complete cds.
AK173180 - Mus musculus mRNA for mKIAA1476 protein.
AK029231 - Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831433H04 product:BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN 2B homolog [Homo sapiens], full insert sequence.
AK030867 - Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830435C13 product:BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN 2B [Homo sapiens], full insert sequence.
AK134250 - Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched library, clone:5930404G07 product:similar to BROMODOMAIN ADJACENT to zinc finger domain 2B (Fragment) [Mus musculus], full insert sequence.
AK147737 - Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270014F21 product:BROMODOMAIN ADJACENT to zinc finger domain 2B (Fragment) homolog [Mus musculus], full insert sequence.
AK029386 - Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4833424A07 product:unclassifiable, full insert sequence.
AK171175 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630230L15 product:unclassifiable, full insert sequence.
BC042646 - Mus musculus bromodomain adjacent to zinc finger domain, 2B, mRNA (cDNA clone IMAGE:5357055), complete cds.
BC053917 - Mus musculus bromodomain adjacent to zinc finger domain, 2B, mRNA (cDNA clone IMAGE:6306095), containing frame-shift errors.
AK143439 - Mus musculus 10 days neonate olfactory brain cDNA, RIKEN full-length enriched library, clone:E530001E13 product:hypothetical Zn-finger-like, PHD finger/Zinc finger PHD-type profile/FYVE/PHD zinc finger containing protein, full insert sequence.
AK047236 - Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930041C24 product:BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN 2B homolog [Homo sapiens], full insert sequence.
AK083663 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030062F19 product:inferred: bromodomain adjacent to zinc finger domain 2B {Homo sapiens}, full insert sequence.
BC027336 - Mus musculus bromodomain adjacent to zinc finger domain, 2B, mRNA (cDNA clone IMAGE:3984364), partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A2AUY4, A2AUY4_MOUSE, ENSMUST00000112550.1, ENSMUST00000112550.2, ENSMUST00000112550.3, ENSMUST00000112550.4, ENSMUST00000112550.5, ENSMUST00000112550.6, ENSMUST00000112550.7, NM_001001182, RP23-323P11.1-001, uc289whr.1, uc289whr.2
UCSC ID: ENSMUST00000112550.8
RefSeq Accession: NM_001001182
Protein: A2AUY4

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.