Mouse Gene Ly6g6e (ENSMUST00000172494.7) Description and Page Index
  Description: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. (from UniProt G3UXD4)
Gencode Transcript: ENSMUST00000172494.7
Gencode Gene: ENSMUSG00000013766.11
Transcript (Including UTRs)
   Position: mm10 chr17:35,076,902-35,078,294 Size: 1,393 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm10 chr17:35,077,155-35,078,232 Size: 1,078 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:35,076,902-35,078,294)mRNA (may differ from genome)Protein (107 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsMGIPubMedStanford SOURCE
UniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: G3UXD4_MOUSE
DESCRIPTION: SubName: Full=Protein Ly6g6e;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.1078-0.245 Picture PostScript Text
3' UTR -20.0062-0.323 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on G3UXD4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK009303 - Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310011I02 product:putative Ly-6 superfamily member, full insert sequence.
BC132420 - Mus musculus lymphocyte antigen 6 complex, locus G6E, mRNA (cDNA clone MGC:164051 IMAGE:40130697), complete cds.
BC138777 - Mus musculus lymphocyte antigen 6 complex, locus G6E, mRNA (cDNA clone MGC:170404 IMAGE:8861799), complete cds.
KU253699 - Mus musculus lymphocyte antigen 6 complex locus G6E (ly6g6e) mRNA, complete cds, alternatively spliced.
KU253700 - Mus musculus lymphocyte antigen 6 complex locus G6E (ly6g6e) mRNA, complete cds, alternatively spliced.
AJ315550 - Mus musculus mRNA for Ly6g6e protein isoform A, splice variant 1.
AJ315551 - Mus musculus mRNA for Ly6g6e protein, isoform B (Ly6G6e gene), splice variant 2.

-  Other Names for This Gene
  Alternate Gene Symbols: BC132420, G3UXD4, G3UXD4_MOUSE, uc289kkp.1
UCSC ID: uc289kkp.1
RefSeq Accession: NM_027366
Protein: G3UXD4

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.