Mouse Gene Foxp1 (ENSMUST00000177437.7) Description and Page Index
  Description: Mus musculus forkhead box P1 (Foxp1), transcript variant 3, mRNA. (from RefSeq NM_001197322)
Gencode Transcript: ENSMUST00000177437.7
Gencode Gene: ENSMUSG00000030067.17
Transcript (Including UTRs)
   Position: mm10 chr6:98,929,466-99,028,258 Size: 98,793 Total Exon Count: 15 Strand: -
Coding Region
   Position: mm10 chr6:98,930,090-99,016,647 Size: 86,558 Coding Exon Count: 14 

Page IndexSequence and LinksCTDRNA StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:98,929,466-99,028,258)mRNA (may differ from genome)Protein (576 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsPubMed
Stanford SOURCEUniProtKBWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.40113-0.464 Picture PostScript Text
3' UTR -184.10624-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK033368 - Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430407G20 product:forkhead box P1, full insert sequence.
AK077062 - Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932443N09 product:forkhead box P1, full insert sequence.
AB594192 - Mus musculus Foxp1a mRNA for forkhead-related transcription factor 1A, complete cds.
BC064764 - Mus musculus forkhead box P1, mRNA (cDNA clone MGC:76591 IMAGE:30430449), complete cds.
AF339105 - Mus musculus forkhead-related transcription factor 1C (Foxp1c) mRNA, complete cds.
AB221601 - Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis,dev_stage=adult, strain=C57BL/6J), clone:V01X014A13.
AB221602 - Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis,dev_stage=adult, strain=C57BL/6J), clone:V01X014A15.
AF339103 - Mus musculus forkhead-related transcription factor 1A (Foxp1a) mRNA, complete cds.
AF339104 - Mus musculus forkhead-related transcription factor 1B (Foxp1b) mRNA, complete cds.
AK031837 - Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330416B21 product:forkhead box P1, full insert sequence.
AK139831 - Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020023N10 product:forkhead box P1, full insert sequence.
AK169176 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920087L15 product:forkhead box P1, full insert sequence.
AK087357 - Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030049G04 product:unclassifiable, full insert sequence.
AK160315 - Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430401A19 product:forkhead box P1, full insert sequence.
AK190196 - Mus musculus cDNA, clone:Y1G0102A11, strand:unspecified.
AK087748 - Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330015F20 product:unclassifiable, full insert sequence.
EF410101 - Mus musculus Accn1/Foxp1 trans-spliced mRNA sequence.
AK144920 - Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830003K13 product:forkhead box P1, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0R4J282, NM_001197322, uc009dbg.1, uc009dbg.2, uc009dbg.3
UCSC ID: uc009dbg.3
RefSeq Accession: NM_001197322
CCDS: CCDS57441.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.