The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
KEGG - Kyoto Encyclopedia of Genes and Genomes mmu04514 - Cell adhesion molecules (CAMs) mmu04660 - T cell receptor signaling pathway mmu04666 - Fc gamma R-mediated phagocytosis mmu05340 - Primary immunodeficiency
BioCarta from NCI Cancer Genome Anatomy Project m_blymphocytePathway - B Lymphocyte Cell Surface Molecules m_tcraPathway - Lck and Fyn tyrosine kinases in initiation of TCR Activation m_tcytotoxicPathway - T Cytotoxic Cell Surface Molecules m_thelperPathway - T Helper Cell Surface Molecules m_CSKPathway - Activation of Csk by cAMP-dependent Protein Kinase Inhibits Signaling through the T Cell Receptor