Mouse Gene Ptprc (ENSMUST00000182755.7) Description and Page Index
  Description: Mus musculus protein tyrosine phosphatase, receptor type, C (Ptprc), transcript variant 3, mRNA. (from RefSeq NM_001268286)
Gencode Transcript: ENSMUST00000182755.7
Gencode Gene: ENSMUSG00000026395.16
Transcript (Including UTRs)
   Position: mm10 chr1:138,063,420-138,175,300 Size: 111,881 Total Exon Count: 29 Strand: -
Coding Region
   Position: mm10 chr1:138,064,506-138,175,087 Size: 110,582 Coding Exon Count: 28 

Page IndexSequence and LinksCTDRNA StructureOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:138,063,420-138,175,300)mRNA (may differ from genome)Protein (1130 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsPubMed
Stanford SOURCEUniProtKBWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -37.50132-0.284 Picture PostScript Text
3' UTR -250.101086-0.230 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  M14342 - Mus musculus clone R4 lymphocyte differentiation antigen isoform (Ly-5) mRNA, complete cds.
M92933 - Mouse lymphocyte common antigen (Ly5) mRNA, complete cds.
AK154893 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630110L08 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.
BC131655 - Mus musculus cDNA clone IMAGE:40110604.
BC167212 - Synthetic construct Mus musculus clone IMAGE:100068112, MGC:195729 protein tyrosine phosphatase, receptor type, C (Ptprc) mRNA, encodes complete protein.
AK054056 - Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230015G23 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.
BC028512 - Mus musculus protein tyrosine phosphatase, receptor type, C, mRNA (cDNA clone IMAGE:3326806), partial cds.
M11934 - Mouse Ly-5 mRNA.
M17320 - Mus musculus alternatively spliced Ly-5 glycoprotein mRNA, 5' end.
AK171802 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830011N13 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.
AK088215 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430007G18 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.
AK079399 - Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830107L10 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.
M14343 - Mus musculus clone R2 LDHA pseudogene mRNA, complete sequence.
BC084684 - Mus musculus protein tyrosine phosphatase, receptor type, C, mRNA (cDNA clone IMAGE:30750553), partial cds.
M15174 - Mouse T200 glycoprotein mRNA, 3' region.
EF101553 - Mus musculus lymphocyte common antigen mRNA, partial cds.
L36091 - Mus musculus CD45 antigen.
AK088875 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430029I06 product:unclassifiable, full insert sequence.
AK153775 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630084N11 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.
AK172193 - Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830103J01 product:protein tyrosine phosphatase, receptor type, C, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04514 - Cell adhesion molecules (CAMs)
mmu04660 - T cell receptor signaling pathway
mmu04666 - Fc gamma R-mediated phagocytosis
mmu05340 - Primary immunodeficiency

BioCarta from NCI Cancer Genome Anatomy Project
m_blymphocytePathway - B Lymphocyte Cell Surface Molecules
m_tcraPathway - Lck and Fyn tyrosine kinases in initiation of TCR Activation
m_tcytotoxicPathway - T Cytotoxic Cell Surface Molecules
m_thelperPathway - T Helper Cell Surface Molecules
m_CSKPathway - Activation of Csk by cAMP-dependent Protein Kinase Inhibits Signaling through the T Cell Receptor

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001268286, S4R1M0, uc007cvi.1, uc007cvi.2, uc007cvi.3, uc007cvi.4
UCSC ID: uc007cvi.4
RefSeq Accession: NM_001268286
CCDS: CCDS15330.2, CCDS59542.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.