Human Gene LINC01672 (ENST00000432429.5) from GENCODE V44
  Description: long intergenic non-protein coding RNA 1672 (from HGNC LINC01672)
Gencode Transcript: ENST00000432429.5
Gencode Gene: ENSG00000228750.7
Transcript (Including UTRs)
   Position: hg38 chr1:6,724,637-6,727,408 Size: 2,772 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:6,724,637-6,727,408)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGencodeLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.22 RPKM in Testis
Total median expression: 2.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC039095 - Homo sapiens cDNA clone IMAGE:4826263.
JD089587 - Sequence 70611 from Patent EP1572962.
JD181004 - Sequence 162028 from Patent EP1572962.
JD194613 - Sequence 175637 from Patent EP1572962.
JD194614 - Sequence 175638 from Patent EP1572962.
JD051335 - Sequence 32359 from Patent EP1572962.
JD217445 - Sequence 198469 from Patent EP1572962.
JD135669 - Sequence 116693 from Patent EP1572962.
JD135670 - Sequence 116694 from Patent EP1572962.
JD237933 - Sequence 218957 from Patent EP1572962.
JD237932 - Sequence 218956 from Patent EP1572962.
JD529700 - Sequence 510724 from Patent EP1572962.
JD434905 - Sequence 415929 from Patent EP1572962.
JD307079 - Sequence 288103 from Patent EP1572962.
JD173106 - Sequence 154130 from Patent EP1572962.
JD203434 - Sequence 184458 from Patent EP1572962.
JD539871 - Sequence 520895 from Patent EP1572962.
JD327169 - Sequence 308193 from Patent EP1572962.
JD447403 - Sequence 428427 from Patent EP1572962.
JD376796 - Sequence 357820 from Patent EP1572962.
JD425806 - Sequence 406830 from Patent EP1572962.
JD144599 - Sequence 125623 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC039095, ENST00000432429.1, ENST00000432429.2, ENST00000432429.3, ENST00000432429.4, uc057bwp.1
UCSC ID: ENST00000432429.5
RefSeq Accession: NR_104620

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.