Human Gene LEKR1 (ENST00000498839.5) Description and Page Index
  Description: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. (from UniProt D6RJ01)
Gencode Transcript: ENST00000498839.5
Gencode Gene: ENSG00000197980.13
Transcript (Including UTRs)
   Position: hg38 chr3:156,826,300-156,853,214 Size: 26,915 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr3:156,829,330-156,853,052 Size: 23,723 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:156,826,300-156,853,214)mRNA (may differ from genome)Protein (110 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsHGNCLynxMGI
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: D6RJ01_HUMAN
DESCRIPTION: SubName: Full=Leucine-, glutamate- and lysine-rich protein 1;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.87 RPKM in Testis
Total median expression: 10.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -40.70121-0.336 Picture PostScript Text
3' UTR -17.90162-0.110 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on D6RJ01
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK131473 - Homo sapiens cDNA FLJ16641 fis, clone TESTI4028958.
BC041967 - Homo sapiens hypothetical protein LOC152084, mRNA (cDNA clone IMAGE:5302439).
AK094480 - Homo sapiens cDNA FLJ37161 fis, clone BRACE2026725.
JD234303 - Sequence 215327 from Patent EP1572962.
JD284754 - Sequence 265778 from Patent EP1572962.
JD304071 - Sequence 285095 from Patent EP1572962.
JD259802 - Sequence 240826 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK131473, D6RJ01, D6RJ01_HUMAN, uc062pha.1
UCSC ID: uc062pha.1
RefSeq Accession: NM_001004316
Protein: D6RJ01

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.