Human Gene TRAPPC4 (ENST00000533058.5) Description and Page Index
  Description: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. (from UniProt E9PN70)
Gencode Transcript: ENST00000533058.5
Gencode Gene: ENSG00000196655.12
Transcript (Including UTRs)
   Position: hg38 chr11:119,018,766-119,025,454 Size: 6,689 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr11:119,018,796-119,025,049 Size: 6,254 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:119,018,766-119,025,454)mRNA (may differ from genome)Protein (257 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: E9PN70_HUMAN
DESCRIPTION: SubName: Full=Trafficking protein particle complex subunit 4;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.17 RPKM in Testis
Total median expression: 959.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -2.5030-0.083 Picture PostScript Text
3' UTR -136.90405-0.338 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011012 - Longin-like_dom
IPR007233 - Sybindin

Pfam Domains:
PF04099 - Sybindin-like family

ModBase Predicted Comparative 3D Structure on E9PN70
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0016192 vesicle-mediated transport

Cellular Component:
GO:0030008 TRAPP complex


-  Descriptions from all associated GenBank mRNAs
  LF208454 - JP 2014500723-A/15957: Polycomb-Associated Non-Coding RNAs.
MA444031 - JP 2018138019-A/15957: Polycomb-Associated Non-Coding RNAs.
AF151862 - Homo sapiens CGI-104 protein mRNA, complete cds.
AF078862 - Homo sapiens PTD009 mRNA, complete cds.
AF105025 - Homo sapiens unknown mRNA.
AF161520 - Homo sapiens HSPC172 mRNA, complete cds.
AK225272 - Homo sapiens mRNA for Probable U3 small nucleolar RNA-associated protein 11 variant, clone: DMC07182.
AK293914 - Homo sapiens cDNA FLJ59189 complete cds, highly similar to Trafficking protein particle complex subunit 4.
AK290520 - Homo sapiens cDNA FLJ76607 complete cds, highly similar to Homo sapiens trafficking protein particle complex 4 (TRAPPC4), mRNA.
AK297422 - Homo sapiens cDNA FLJ55104 complete cds, moderately similar to Trafficking protein particle complex subunit4.
AK293977 - Homo sapiens cDNA FLJ53004 complete cds, highly similar to Trafficking protein particle complex subunit 4.
AK025623 - Homo sapiens cDNA: FLJ21970 fis, clone HEP05733, highly similar to AF161520 Homo sapiens HSPC172 mRNA.
BC010866 - Homo sapiens trafficking protein particle complex 4, mRNA (cDNA clone MGC:9507 IMAGE:3876778), complete cds.
DQ571038 - Homo sapiens piRNA piR-31150, complete sequence.
DQ599821 - Homo sapiens piRNA piR-37887, complete sequence.
HZ409118 - JP 2015528002-A/1715: CHIRAL CONTROL.
HZ459698 - WO 2015182781-A/401: Kit or device and method for detecting pancreatic cancer.
HZ460260 - WO 2015190542-A/266: Kit or device and method for detecting biliary tract cancer.
HZ460843 - WO 2015190584-A/340: Kit or device and method for detecting prostate cancer.
HZ461516 - WO 2015190586-A/329: Kit and method for detecting colon cancer.
HZ462294 - WO 2015190591-A/449: Kit and method for detecting breast cancer.
HZ463289 - WO 2015194535-A/383: Kit and method for detecting stomach cancer.
HZ463814 - WO 2015194610-A/250: Kit and method for detecting lung cancer.
HZ464540 - WO 2015194615-A/358: Kit or device and method for detecting hepatic cancer.
HZ465283 - WO 2015194627-A/336: Kit and method for detecting esophageal cancer.
LG052452 - KR 1020150036642-A/1718: CHIRAL CONTROL.
LY481138 - KR 1020170010856-A/401: PANCREATIC CANCER DETECTION KIT, DEVICE, AND DETECTION METHOD.
LY495887 - KR 1020170015509-A/266: DETECTION KIT OR DEVICE AND DETECTION METHOD FOR BILIARY TRACT CANCER.
LY496466 - KR 1020170018406-A/336: ESOPHAGEAL CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LY497159 - KR 1020170016485-A/329: COLORECTAL CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LY497715 - KR 1020170018409-A/250: KIT OR DEVICE FOR DETECTING LUNG CANCER, AND LUNG CANCER DETECTION METHOD.
LY498441 - KR 1020170018411-A/358: LIVER CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LY499297 - KR 1020170018412-A/449: BREAST CANCER DETECTION KIT OR DEVICE, AND METHOD FOR DETECTING BREAST CANCER.
LY500102 - KR 1020170019425-A/383: STOMACH CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LY500716 - KR 1020170016490-A/340: PROSTATE CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD.
LZ238777 - WO 2017171048-A/438: Kit, device and method for detecting early pancreatic cancer or precancerous lesion of pancreas.
MS869052 - Sequence 266 from Patent EP3156500.
MS869635 - Sequence 340 from Patent EP3156483.
MS880612 - Sequence 449 from Patent EP3156498.
MS884346 - Sequence 329 from Patent EP3156499.
MS885221 - Sequence 383 from Patent EP3156503.
MS994474 - Sequence 336 from Patent EP3159406.
MS996781 - Sequence 250 from Patent EP3159416.
LF376392 - JP 2014500723-A/183895: Polycomb-Associated Non-Coding RNAs.
MA611969 - JP 2018138019-A/183895: Polycomb-Associated Non-Coding RNAs.
LF376391 - JP 2014500723-A/183894: Polycomb-Associated Non-Coding RNAs.
MA611968 - JP 2018138019-A/183894: Polycomb-Associated Non-Coding RNAs.
CU677382 - Synthetic construct Homo sapiens gateway clone IMAGE:100017249 3' read SLC37A4 mRNA.
MA822734 - WO 2019004436-A/547: Kit, device, and method for detection of lung cancer.
LY616541 - KR 1020180129785-A/438: KIT OR DEVICE FOR DETECTING EARLY STAGE PANCREATIC CANCER OR PANCREATIC CANCER PRECURSOR LESIONS AND DETECTION METHOD THEREFOR.

-  Other Names for This Gene
  Alternate Gene Symbols: AK025623, E9PN70, E9PN70_HUMAN, uc058icv.1
UCSC ID: uc058icv.1
RefSeq Accession: NM_016146
Protein: E9PN70

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.