Human Gene TRAPPC4 (ENST00000533058.5) Description and Page Index
Description: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. (from UniProt E9PN70) Gencode Transcript: ENST00000533058.5 Gencode Gene: ENSG00000196655.12 Transcript (Including UTRs) Position: hg38 chr11:119,018,766-119,025,454 Size: 6,689 Total Exon Count: 5 Strand: + Coding Region Position: hg38 chr11:119,018,796-119,025,049 Size: 6,254 Coding Exon Count: 5
ID:E9PN70_HUMAN DESCRIPTION: SubName: Full=Trafficking protein particle complex subunit 4; CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
ModBase Predicted Comparative 3D Structure on E9PN70
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
LF208454 - JP 2014500723-A/15957: Polycomb-Associated Non-Coding RNAs. MA444031 - JP 2018138019-A/15957: Polycomb-Associated Non-Coding RNAs. AF151862 - Homo sapiens CGI-104 protein mRNA, complete cds. AF078862 - Homo sapiens PTD009 mRNA, complete cds. AF105025 - Homo sapiens unknown mRNA. AF161520 - Homo sapiens HSPC172 mRNA, complete cds. AK225272 - Homo sapiens mRNA for Probable U3 small nucleolar RNA-associated protein 11 variant, clone: DMC07182. AK293914 - Homo sapiens cDNA FLJ59189 complete cds, highly similar to Trafficking protein particle complex subunit 4. AK290520 - Homo sapiens cDNA FLJ76607 complete cds, highly similar to Homo sapiens trafficking protein particle complex 4 (TRAPPC4), mRNA. AK297422 - Homo sapiens cDNA FLJ55104 complete cds, moderately similar to Trafficking protein particle complex subunit4. AK293977 - Homo sapiens cDNA FLJ53004 complete cds, highly similar to Trafficking protein particle complex subunit 4. AK025623 - Homo sapiens cDNA: FLJ21970 fis, clone HEP05733, highly similar to AF161520 Homo sapiens HSPC172 mRNA. BC010866 - Homo sapiens trafficking protein particle complex 4, mRNA (cDNA clone MGC:9507 IMAGE:3876778), complete cds. DQ571038 - Homo sapiens piRNA piR-31150, complete sequence. DQ599821 - Homo sapiens piRNA piR-37887, complete sequence. HZ409118 - JP 2015528002-A/1715: CHIRAL CONTROL. HZ459698 - WO 2015182781-A/401: Kit or device and method for detecting pancreatic cancer. HZ460260 - WO 2015190542-A/266: Kit or device and method for detecting biliary tract cancer. HZ460843 - WO 2015190584-A/340: Kit or device and method for detecting prostate cancer. HZ461516 - WO 2015190586-A/329: Kit and method for detecting colon cancer. HZ462294 - WO 2015190591-A/449: Kit and method for detecting breast cancer. HZ463289 - WO 2015194535-A/383: Kit and method for detecting stomach cancer. HZ463814 - WO 2015194610-A/250: Kit and method for detecting lung cancer. HZ464540 - WO 2015194615-A/358: Kit or device and method for detecting hepatic cancer. HZ465283 - WO 2015194627-A/336: Kit and method for detecting esophageal cancer. LG052452 - KR 1020150036642-A/1718: CHIRAL CONTROL. LY481138 - KR 1020170010856-A/401: PANCREATIC CANCER DETECTION KIT, DEVICE, AND DETECTION METHOD. LY495887 - KR 1020170015509-A/266: DETECTION KIT OR DEVICE AND DETECTION METHOD FOR BILIARY TRACT CANCER. LY496466 - KR 1020170018406-A/336: ESOPHAGEAL CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD. LY497159 - KR 1020170016485-A/329: COLORECTAL CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD. LY497715 - KR 1020170018409-A/250: KIT OR DEVICE FOR DETECTING LUNG CANCER, AND LUNG CANCER DETECTION METHOD. LY498441 - KR 1020170018411-A/358: LIVER CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD. LY499297 - KR 1020170018412-A/449: BREAST CANCER DETECTION KIT OR DEVICE, AND METHOD FOR DETECTING BREAST CANCER. LY500102 - KR 1020170019425-A/383: STOMACH CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD. LY500716 - KR 1020170016490-A/340: PROSTATE CANCER DETECTION KIT OR DEVICE, AND DETECTION METHOD. LZ238777 - WO 2017171048-A/438: Kit, device and method for detecting early pancreatic cancer or precancerous lesion of pancreas. MS869052 - Sequence 266 from Patent EP3156500. MS869635 - Sequence 340 from Patent EP3156483. MS880612 - Sequence 449 from Patent EP3156498. MS884346 - Sequence 329 from Patent EP3156499. MS885221 - Sequence 383 from Patent EP3156503. MS994474 - Sequence 336 from Patent EP3159406. MS996781 - Sequence 250 from Patent EP3159416. LF376392 - JP 2014500723-A/183895: Polycomb-Associated Non-Coding RNAs. MA611969 - JP 2018138019-A/183895: Polycomb-Associated Non-Coding RNAs. LF376391 - JP 2014500723-A/183894: Polycomb-Associated Non-Coding RNAs. MA611968 - JP 2018138019-A/183894: Polycomb-Associated Non-Coding RNAs. CU677382 - Synthetic construct Homo sapiens gateway clone IMAGE:100017249 3' read SLC37A4 mRNA. MA822734 - WO 2019004436-A/547: Kit, device, and method for detection of lung cancer. LY616541 - KR 1020180129785-A/438: KIT OR DEVICE FOR DETECTING EARLY STAGE PANCREATIC CANCER OR PANCREATIC CANCER PRECURSOR LESIONS AND DETECTION METHOD THEREFOR.