Human Gene CCDC82 (ENST00000647080.1) Description and Page Index
  Description: coiled-coil domain containing 82 (from HGNC CCDC82)
Gencode Transcript: ENST00000647080.1
Gencode Gene: ENSG00000149231.14
Transcript (Including UTRs)
   Position: hg38 chr11:96,352,787-96,389,921 Size: 37,135 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr11:96,353,646-96,384,747 Size: 31,102 Coding Exon Count: 7 

Page IndexSequence and LinksCTDRNA-Seq ExpressionRNA StructureOther Species
mRNA DescriptionsOther NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:96,352,787-96,389,921)mRNA (may differ from genome)Protein (495 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCEUniProtKBWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.84 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 433.36 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -72.70216-0.337 Picture PostScript Text
3' UTR -157.10859-0.183 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK027171 - Homo sapiens cDNA: FLJ23518 fis, clone LNG04878.
AK074306 - Homo sapiens cDNA FLJ23726 fis, clone HEP14044.
AF245436 - Homo sapiens HT025 mRNA, complete cds.
JD154677 - Sequence 135701 from Patent EP1572962.
JD062042 - Sequence 43066 from Patent EP1572962.
JD086807 - Sequence 67831 from Patent EP1572962.
JD566496 - Sequence 547520 from Patent EP1572962.
JD312875 - Sequence 293899 from Patent EP1572962.
JD304822 - Sequence 285846 from Patent EP1572962.
JD317111 - Sequence 298135 from Patent EP1572962.
JD082523 - Sequence 63547 from Patent EP1572962.
BC033726 - Homo sapiens coiled-coil domain containing 82, mRNA (cDNA clone MGC:44958 IMAGE:5001231), complete cds.
AK056790 - Homo sapiens cDNA FLJ32228 fis, clone PLACE6004397, highly similar to Coiled-coil domain-containing protein 82.
JD359653 - Sequence 340677 from Patent EP1572962.
JD181515 - Sequence 162539 from Patent EP1572962.
AK314669 - Homo sapiens cDNA, FLJ95516.
EU831803 - Synthetic construct Homo sapiens clone HAIB:100066832; DKFZo008E1121 coiled-coil domain containing 82 protein (CCDC82) gene, encodes complete protein.
EU831880 - Synthetic construct Homo sapiens clone HAIB:100066909; DKFZo004E1122 coiled-coil domain containing 82 protein (CCDC82) gene, encodes complete protein.
BC018663 - Homo sapiens coiled-coil domain containing 82, mRNA (cDNA clone MGC:2462 IMAGE:2964737), complete cds.
JF432455 - Synthetic construct Homo sapiens clone IMAGE:100073667 coiled-coil domain containing 82 (CCDC82) gene, encodes complete protein.
KJ903222 - Synthetic construct Homo sapiens clone ccsbBroadEn_12616 CCDC82 gene, encodes complete protein.
JD396370 - Sequence 377394 from Patent EP1572962.
JD055355 - Sequence 36379 from Patent EP1572962.
AF161533 - Homo sapiens HSPC048 mRNA, complete cds.
AK313893 - Homo sapiens cDNA, FLJ94528, Homo sapiens HSPC048 protein (HSPC048), mRNA.
JD471675 - Sequence 452699 from Patent EP1572962.
JD179952 - Sequence 160976 from Patent EP1572962.
JD472089 - Sequence 453113 from Patent EP1572962.
JD141720 - Sequence 122744 from Patent EP1572962.
JD077367 - Sequence 58391 from Patent EP1572962.
JD109006 - Sequence 90030 from Patent EP1572962.
JD408805 - Sequence 389829 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A2R8Y4L3, AK074306, uc285jji.1
UCSC ID: uc285jji.1
RefSeq Accession: NM_001318736

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.