Human Gene BDNF-AS (ENST00000660080.1) Description and Page Index
  Description: BDNF antisense RNA (from HGNC BDNF-AS)
Gencode Transcript: ENST00000660080.1
Gencode Gene: ENSG00000245573.9
Transcript (Including UTRs)
   Position: hg38 chr11:27,639,943-27,696,422 Size: 56,480 Total Exon Count: 8 Strand: +


Page IndexSequence and LinksMalaCardsRNA-Seq ExpressionOther SpeciesmRNA Descriptions
Other NamesMethods
Data last updated: 2019-09-04

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:27,639,943-27,696,422)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerHGNCLynxPubMed
Stanford SOURCE

-  MalaCards Disease Associations
  MalaCards Gene Search: BDNF-AS
Diseases sorted by gene-association score: substance abuse (2)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.73 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 68.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  EF689023 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689025 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689027 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689029 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689031 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689033 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689035 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689037 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689039 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689041 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689022 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689024 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689026 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689028 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689030 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689032 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689034 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689036 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689038 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689040 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
EF689042 - Homo sapiens brain derived neurotrophic factor antisense RNA variant (BDNF) sequence.
AY054391 - Homo sapiens non-coding transcript BT2C (BDNF) mRNA, complete sequence; alternatively spliced.
AY054403 - Homo sapiens non-coding transcript BT2B (BDNF) mRNA, complete sequence; alternatively spliced.
AY054404 - Homo sapiens non-coding transcript BT2D (BDNF) mRNA, complete sequence; alternatively spliced.
AY054405 - Homo sapiens non-coding transcript BT2A (BDNF) mRNA, complete sequence; alternatively spliced.
AY054401 - Homo sapiens non-coding transcript BT1C (BDNF) mRNA, complete sequence; alternatively spliced.
AY054402 - Homo sapiens non-coding transcript BT1A (BDNF) mRNA, complete sequence; alternatively spliced.
AY513486 - Homo sapiens non-coding transcript BT1B (BDNF) mRNA, complete sequence; alternatively spliced.
CU688745 - Synthetic construct Homo sapiens gateway clone IMAGE:100018605 3' read BDNF mRNA.
AJ011601 - Homo sapiens trapped 3' terminal exon, clone C2C4.

-  Other Names for This Gene
  Alternate Gene Symbols: AY054403, uc287uap.1
UCSC ID: uc287uap.1
RefSeq Accession: NR_002832

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.