Human Gene RABGAP1L (ENST00000681986.1) from GENCODE V38
  Description: Homo sapiens RAB GTPase activating protein 1 like (RABGAP1L), transcript variant 11, non-coding RNA. (from RefSeq NR_158982)
Gencode Transcript: ENST00000681986.1
Gencode Gene: ENSG00000152061.24
Transcript (Including UTRs)
   Position: hg38 chr1:174,159,520-174,995,308 Size: 835,789 Total Exon Count: 26 Strand: +
Coding Region
   Position: hg38 chr1:174,219,158-174,990,001 Size: 770,844 Coding Exon Count: 25 

Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-09-27 09:51:20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:174,159,520-174,995,308)mRNA (may differ from genome)Protein (1051 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMed

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.54 RPKM in Heart - Atrial Appendage
Total median expression: 185.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -76.60171-0.448 Picture PostScript Text
3' UTR -1257.305307-0.237 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC041888 - Homo sapiens RAB GTPase activating protein 1-like, mRNA (cDNA clone MGC:44489 IMAGE:5298493), complete cds.
AK095838 - Homo sapiens cDNA FLJ38519 fis, clone HCHON2000751, moderately similar to Rab6 GTPase activating protein.
AL157958 - Novel human mRNA from chromosome 1, clones AL031286, AL022400, AL022171, has similarities to mouse Hh1 mRNA (af118565) and human rab6 GTPase activating protein.
KJ902037 - Synthetic construct Homo sapiens clone ccsbBroadEn_11431 RABGAP1L gene, encodes complete protein.
AB449904 - Homo sapiens TBC1D18 mRNA for TBC1 domain family, member 18, complete cds.
AF279778 - Homo sapiens clone N9 NTera2D1 teratocarcinoma mRNA.
AK074409 - Homo sapiens cDNA FLJ23829 fis, clone HUV01026, highly similar to Rab6 GTPase activating protein.
AY364260 - Homo sapiens clone peg2130 HHL (HHL) mRNA, partial cds.
BC062541 - Homo sapiens RAB GTPase activating protein 1-like, mRNA (cDNA clone IMAGE:5925319), with apparent retained intron.
AB019493 - Homo sapiens IDN4-GGTR9 mRNA, partial cds.
AB019490 - Homo sapiens IDN4-GGTR7 mRNA, partial cds.
AB019489 - Homo sapiens IDN4-GGTR6 mRNA, partial cds.
AB019491 - Homo sapiens IDN4-GGTR8 mRNA, partial cds.
BC018630 - Homo sapiens RAB GTPase activating protein 1-like, mRNA (cDNA clone IMAGE:4308560), partial cds.
AB019492 - Homo sapiens IDN4-GGTR14 mRNA, partial cds.
AB007940 - Homo sapiens KIAA0471 mRNA for KIAA0471 protein.
AB385338 - Synthetic construct DNA, clone: pF1KA0471, Homo sapiens RABGAP1L gene for RAB GTPase activating protein 1-like isoform A, complete cds, without stop codon, in Flexi system.
CR627374 - Homo sapiens mRNA; cDNA DKFZp686E1450 (from clone DKFZp686E1450).
AL035303 - H.sapiens gene from PAC 102G20.
AK316355 - Homo sapiens cDNA, FLJ79254 complete cds, highly similar to Mus musculus RAB GTPase activating protein 1-like (Rabgap1l), transcript variant 2, mRNA.
LF383651 - JP 2014500723-A/191154: Polycomb-Associated Non-Coding RNAs.
MA619228 - JP 2018138019-A/191154: Polycomb-Associated Non-Coding RNAs.
AK316219 - Homo sapiens cDNA, FLJ79118 complete cds, highly similar to Mus musculus RAB GTPase activating protein 1-like (Rabgap1l), transcript variant 2, mRNA.
AK298711 - Homo sapiens cDNA FLJ58037 complete cds, highly similar to Mus musculus RAB GTPase activating protein 1-like (Rabgap1l), transcript variant 2, mRNA.
CU692044 - Synthetic construct Homo sapiens gateway clone IMAGE:100020966 5' read RABGAP1L mRNA.
KT900847 - Homo sapiens clone AS6-1_AT1 L1-chimeric transcript sequence.
KT900848 - Homo sapiens clone AS6-3 L1-chimeric transcript sequence.
AL049701 - Human gene from PAC 433G19, chromosome 1.
BC012094 - Homo sapiens RAB GTPase activating protein 1-like, mRNA (cDNA clone IMAGE:4661946), complete cds.
AL049702 - Human gene from PAC 433G19, chromosome 1.
KJ906012 - Synthetic construct Homo sapiens clone ccsbBroadEn_15682 RABGAP1L gene, encodes complete protein.
JF432441 - Synthetic construct Homo sapiens clone IMAGE:100073649 RAB GTPase activating protein 1-like (RABGAP1L) gene, encodes complete protein.
JD491681 - Sequence 472705 from Patent EP1572962.
JD299945 - Sequence 280969 from Patent EP1572962.
JD369259 - Sequence 350283 from Patent EP1572962.
JD061246 - Sequence 42270 from Patent EP1572962.
JD254117 - Sequence 235141 from Patent EP1572962.
JD171057 - Sequence 152081 from Patent EP1572962.
JD300383 - Sequence 281407 from Patent EP1572962.
JD316841 - Sequence 297865 from Patent EP1572962.
JD245511 - Sequence 226535 from Patent EP1572962.
JD351397 - Sequence 332421 from Patent EP1572962.
JD230160 - Sequence 211184 from Patent EP1572962.
JD258256 - Sequence 239280 from Patent EP1572962.
JD411353 - Sequence 392377 from Patent EP1572962.
JD373211 - Sequence 354235 from Patent EP1572962.
JD040369 - Sequence 21393 from Patent EP1572962.
JD259056 - Sequence 240080 from Patent EP1572962.
JD208735 - Sequence 189759 from Patent EP1572962.
JD353242 - Sequence 334266 from Patent EP1572962.
JD145250 - Sequence 126274 from Patent EP1572962.
JD241144 - Sequence 222168 from Patent EP1572962.
JD388195 - Sequence 369219 from Patent EP1572962.
JD286041 - Sequence 267065 from Patent EP1572962.
JD240398 - Sequence 221422 from Patent EP1572962.
JD057670 - Sequence 38694 from Patent EP1572962.
JD208411 - Sequence 189435 from Patent EP1572962.
JD188191 - Sequence 169215 from Patent EP1572962.
JD356738 - Sequence 337762 from Patent EP1572962.
JD053152 - Sequence 34176 from Patent EP1572962.
JD517625 - Sequence 498649 from Patent EP1572962.
JD517626 - Sequence 498650 from Patent EP1572962.
JD105924 - Sequence 86948 from Patent EP1572962.
JD110026 - Sequence 91050 from Patent EP1572962.
JD358280 - Sequence 339304 from Patent EP1572962.
JD160272 - Sequence 141296 from Patent EP1572962.
JD504221 - Sequence 485245 from Patent EP1572962.
JD047023 - Sequence 28047 from Patent EP1572962.
JD037675 - Sequence 18699 from Patent EP1572962.
JD434342 - Sequence 415366 from Patent EP1572962.
JD093368 - Sequence 74392 from Patent EP1572962.
JD041010 - Sequence 22034 from Patent EP1572962.
JD132652 - Sequence 113676 from Patent EP1572962.
JD314282 - Sequence 295306 from Patent EP1572962.
JD562644 - Sequence 543668 from Patent EP1572962.
JD284179 - Sequence 265203 from Patent EP1572962.
JD301613 - Sequence 282637 from Patent EP1572962.
JD509784 - Sequence 490808 from Patent EP1572962.
JD538916 - Sequence 519940 from Patent EP1572962.
JD170355 - Sequence 151379 from Patent EP1572962.
JD098403 - Sequence 79427 from Patent EP1572962.
JD238865 - Sequence 219889 from Patent EP1572962.
JD205279 - Sequence 186303 from Patent EP1572962.
JD120097 - Sequence 101121 from Patent EP1572962.
JD248745 - Sequence 229769 from Patent EP1572962.
JD563935 - Sequence 544959 from Patent EP1572962.
JD378670 - Sequence 359694 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_158982, uc289dcy.1
UCSC ID: ENST00000681986.1
RefSeq Accession: NM_001366446

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.