Mouse Gene Dzip1l (R15137) Description and Page Index
  Description: DAZ interacting protein 1-like
Transcript (Including UTRs)
   Position: mm8 chr9:99,438,947-99,478,607 Size: 39,661 Total Exon Count: 16 Strand: +
Coding Region
   Position: mm8 chr9:99,446,774-99,477,155 Size: 30,382 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsCTDMicroarray ExpressionRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated: 2006-02-27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:99,438,947-99,478,607)mRNA (may differ from genome)Protein (774 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAllen Brain Atlas
BioGPSCGAPEnsemblEntrez GeneGeneCardsGeneNetwork
MGIPubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: DZI1L_MOUSE
DESCRIPTION: RecName: Full=Zinc finger protein DZIP1L; AltName: Full=DAZ-interacting protein 1-like protein;
SIMILARITY: Belongs to the DZIP C2H2-type zinc-finger protein family.
SIMILARITY: Contains 1 C2H2-type zinc finger.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
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GNF Expression Atlas Data from U74b Mouse Chip

n/a
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Absolute

Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -60.10150-0.401 Picture PostScript Text
3' UTR -473.941452-0.326 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like

ModBase Predicted Comparative 3D Structure on Q499E4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologGenome BrowserNo orthologNo orthologGenome Browser
Gene DetailsGene Details   Gene Details
Gene SorterGene Sorter   Gene Sorter
GenBankRGDEnsembl  SGD
Protein Sequence Protein Sequence  Protein Sequence
Alignment Alignment  Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0046872 metal ion binding

Biological Process:
GO:0032880 regulation of protein localization
GO:0060271 cilium assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005814 centriole
GO:0005856 cytoskeleton
GO:0005929 cilium
GO:0036064 ciliary basal body
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  AK012132 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610524A10 product:weakly similar to ZINC-FINGER PROTEIN DZIP2 [Homo sapiens], full insert sequence.
AK208844 - Mus musculus cDNA, clone:Y2G0112P05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000042295, based on BLAT search.
BC099950 - Mus musculus DAZ interacting protein 1-like, mRNA (cDNA clone MGC:107436 IMAGE:30094307), complete cds.
AK034503 - Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330209A15 product:hypothetical Zinc finger, C2H2 type containing protein, full insert sequence.
AK166083 - Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730037B02 product:Hypothetical zinc finger, full insert sequence.
AK028787 - Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732456L14 product:hypothetical Zinc finger, C2H2 type containing protein, full insert sequence.
BC145204 - Mus musculus DAZ interacting protein 1-like, mRNA (cDNA clone MGC:178763 IMAGE:9053755), complete cds.
BC138218 - Mus musculus DAZ interacting protein 1-like, mRNA (cDNA clone MGC:169842 IMAGE:8861237), complete cds.
AK215157 - Mus musculus cDNA, clone:Y2G0134C15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000042295, based on BLAT search.
AK164426 - Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230019J01 product:hypothetical protein, full insert sequence.
AK086512 - Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930033G19 product:unclassifiable, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: AK028787, AK166083, BC099950
UCSC ID: NM_028258
RefSeq Accession: NM_028258
Protein: Q499E4 (aka DZI1L_MOUSE)
CCDS: CCDS23436.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.