Mouse Gene Smap1l (R10117) Description and Page Index
  Description: stromal membrane-associated protein 1-like
Transcript (Including UTRs)
   Position: mm8 chr4:120,465,962-120,514,882 Size: 48,921 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm8 chr4:120,467,174-120,514,486 Size: 47,313 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesMethods
Data last updated: 2006-02-27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:120,465,962-120,514,882)mRNA (may differ from genome)Protein (118 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAllen Brain Atlas
BioGPSCGAPEnsemblEntrez GeneGeneCardsGeneNetwork
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: Q3UM96_MOUSE
DESCRIPTION: SubName: Full=Putative uncharacterized protein; Flags: Fragment;
SIMILARITY: Contains 1 Arf-GAP domain.

-  Microarray Expression Data
 
Expression ratio colors:

GNF Expression Atlas 2 Data from GNF1M Mouse Chip

    
     
      
       
     
    
   
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Rinn et. al Sex Gene Expression Data on MOE430A Chip

        
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GNF Expression Atlas Data from U74b Mouse Chip

n/a
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Affymetrix All Exon Microarrays

           
Ratios

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -238.50396-0.602 Picture PostScript Text
3' UTR -354.901212-0.293 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001164 - ArfGAP

Pfam Domains:
PF01412 - Putative GTPase activating protein for Arf

ModBase Predicted Comparative 3D Structure on Q3UM96
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
GenBank EnsemblFlyBaseWormBaseSGD
Protein Sequence Protein SequenceProtein SequenceProtein SequenceProtein Sequence
Alignment AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity

Biological Process:
GO:0043547 positive regulation of GTPase activity


-  Descriptions from all associated GenBank mRNAs
  AK219111 - Mus musculus cDNA, clone:Y2G0147G08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK215941 - Mus musculus cDNA, clone:Y2G0136K24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
BC051481 - Mus musculus stromal membrane-associated GTPase-activating protein 2, mRNA (cDNA clone IMAGE:1349315), complete cds.
BC032217 - Mus musculus stromal membrane-associated GTPase-activating protein 2, mRNA (cDNA clone IMAGE:5323502), **** WARNING: chimeric clone ****.
BC031581 - Mus musculus stromal membrane-associated GTPase-activating protein 2, mRNA (cDNA clone IMAGE:4949664), **** WARNING: chimeric clone ****.
AK209062 - Mus musculus cDNA, clone:Y2G0113M19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK205034 - Mus musculus cDNA, clone:Y1G0150G20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK007666 - Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810031K02 product:MMAN-7, full insert sequence.
BC052413 - Mus musculus stromal membrane-associated GTPase-activating protein 2, mRNA (cDNA clone MGC:63445 IMAGE:5720177), complete cds.
AB029329 - Mus musculus mRNA for MMAN-7, complete cds.
AK179675 - Mus musculus cDNA, clone:Y0G0111F03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK202503 - Mus musculus cDNA, clone:Y1G0141L16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK183913 - Mus musculus cDNA, clone:Y0G0127N15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK152757 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830083N15 product:similar to BA160A9.3.1 (Novel protein, isoform 1) (Fragment) [Homo sapiens], full insert sequence.
AK217590 - Mus musculus cDNA, clone:Y2G0142E15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK145042 - Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830030A15 product:similar to SMAP1 protein (Fragment) [Homo sapiens], full insert sequence.
AK200754 - Mus musculus cDNA, clone:Y1G0135M23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK188894 - Mus musculus cDNA, clone:Y0G0146N08, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK184829 - Mus musculus cDNA, clone:Y0G0131K19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK205228 - Mus musculus cDNA, clone:Y2G0101B01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK206237 - Mus musculus cDNA, clone:Y2G0104D05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.
AK209974 - Mus musculus cDNA, clone:Y2G0116O20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000043200, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04144 - Endocytosis

-  Other Names for This Gene
  Alternate Gene Symbols: BC052413
UCSC ID: NM_133716
RefSeq Accession: NM_133716
Protein: Q3UM96 CCDS: CCDS18598.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.