S. cerevisiae Gene SEF1 (YBL066C)
  Description: Putative transcription factor, has homolog in Kluyveromyces lactis
Transcript (Including UTRs)
   Position: sacCer3 chrII:96,669-100,115 Size: 3,447 Total Exon Count: 1 Strand: -
Coding Region
   Position: sacCer3 chrII:96,669-100,115 Size: 3,447 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2011-08-29

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrII:96,669-100,115)mRNAProtein (1148 aa)
Gene SorterGenome BrowserOther Species FASTASGDUniProtKB

-  Comments and Description Text from UniProtKB
  ID: SEF1_YEAST
DESCRIPTION: RecName: Full=Putative transcription factor SEF1; AltName: Full=Suppressor of essential function protein 1; AltName: Full=Suppressor protein SEF1;
FUNCTION: Putative transcription factor that seems to be involved in the sporulation process. Suppresses the lethal phenotype of RPM2 deletion.
SUBCELLULAR LOCATION: Nucleus (Probable).
SIMILARITY: Contains 1 Zn(2)-C6 fungal-type DNA-binding domain.
SEQUENCE CAUTION: Sequence=CAA84885.1; Type=Miscellaneous discrepancy; Note=Sequencing errors;

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007219 - Transcription_factor_fun
IPR001138 - Zn2-C6_fun-type_DNA-bd

Pfam Domains:
PF04082 - Fungal specific transcription factor domain
PF00172 - Fungal Zn(2)-Cys(6) binuclear cluster domain

ModBase Predicted Comparative 3D Structure on P34228
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanMouseRatZebrafishD. melanogasterC. elegans
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
    Gene Details 
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    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003674 molecular_function
GO:0003677 DNA binding
GO:0008270 zinc ion binding
GO:0044212 transcription regulatory region DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0008150 biological_process
GO:0030435 sporulation resulting in formation of a cellular spore

Cellular Component:
GO:0005575 cellular_component
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  MN047840 - Synthetic construct clone CCSBy3024B11 Gateway entry clone sequence.

-  Other Names for This Gene
  UCSC ID: YBL066C
Protein: P34228 (aka SEF1_YEAST)

-  SGD Genes Methods, Credits, and Data Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.