Human Gene ELAVL4 (ENST00000448907.7) from GENCODE V44
  Description: Homo sapiens ELAV like RNA binding protein 4 (ELAVL4), transcript variant 7, mRNA. (from RefSeq NM_001324208)
Gencode Transcript: ENST00000448907.7
Gencode Gene: ENSG00000162374.18
Transcript (Including UTRs)
   Position: hg38 chr1:50,048,014-50,201,570 Size: 153,557 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg38 chr1:50,048,165-50,201,178 Size: 153,014 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:50,048,014-50,201,570)mRNA (may differ from genome)Protein (369 aa)
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HGNCLynxMalacardsMGIneXtProtOMIM
PubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ELAV4_HUMAN
DESCRIPTION: RecName: Full=ELAV-like protein 4; AltName: Full=Hu-antigen D; Short=HuD; AltName: Full=Paraneoplastic encephalomyelitis antigen HuD;
FUNCTION: May play a role in neuron-specific RNA processing. Protects CDKN1A mRNA from decay by binding to its 3'-UTR (By similarity). Binds to AU-rich sequences (AREs) of target mRNAs, including VEGF and FOS mRNA.
SUBUNIT: Component of a TAU mRNP complex, at least composed of IGF2BP1, ELAVL4 and G3BP (By similarity).
TISSUE SPECIFICITY: Brain.
PTM: Methylation at Arg-243 by CARM1 weakens protective binding to the 3'-UTR of CDKN1A mRNA and down-regulates CDKN1A protein expression, thereby maintaining cells in a proliferative state. Methylation is inhibited by NGF, which facilitates neurite outgrowth (By similarity).
SIMILARITY: Belongs to the RRM elav family.
SIMILARITY: Contains 3 RRM (RNA recognition motif) domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ELAVL4
Diseases sorted by gene-association score: hallucinogen abuse (7), paraneoplastic neurologic disorders (4), small cell cancer of the lung, somatic (3), lung cancer (2), kidney rhabdoid cancer (2), paraneoplastic cerebellar degeneration (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.53 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 74.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -85.00151-0.563 Picture PostScript Text
3' UTR -75.50392-0.193 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006548 - ELAD_HUD_SF
IPR002343 - Hud_Sxl_RNA
IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom

Pfam Domains:
PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1FXL - X-ray MuPIT 1G2E - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P26378
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003730 mRNA 3'-UTR binding
GO:0017091 AU-rich element binding

Biological Process:
GO:0006396 RNA processing
GO:0006397 mRNA processing


-  Descriptions from all associated GenBank mRNAs
  AK297338 - Homo sapiens cDNA FLJ55562 complete cds, highly similar to ELAV-like protein 4.
AY033995 - Homo sapiens HUD3 mRNA, complete cds.
AY033996 - Homo sapiens HUD4 mRNA, complete cds.
AY033997 - Homo sapiens HUD1 mRNA, complete cds.
BC036071 - Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D), mRNA (cDNA clone MGC:33705 IMAGE:5286347), complete cds.
AY033998 - Homo sapiens HUDPRO1 mRNA, complete cds.
M62843 - Human brain protein recognized by the sera of patients with paraneoplastic sensory neuronopathy mRNA, complete cds.
AK298902 - Homo sapiens cDNA FLJ50619 complete cds, highly similar to ELAV-like protein 4.
AK298817 - Homo sapiens cDNA FLJ51957 complete cds, highly similar to ELAV-like protein 4.
AB528649 - Synthetic construct DNA, clone: pF1KB6514, Homo sapiens ELAVL4 gene for ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 4, without stop codon, in Flexi system.
KJ896760 - Synthetic construct Homo sapiens clone ccsbBroadEn_06154 ELAVL4 gene, encodes complete protein.
AK309653 - Homo sapiens cDNA, FLJ99694.
JD303715 - Sequence 284739 from Patent EP1572962.
JD331259 - Sequence 312283 from Patent EP1572962.
JD357230 - Sequence 338254 from Patent EP1572962.
BX648050 - Homo sapiens mRNA; cDNA DKFZp686C08203 (from clone DKFZp686C08203).

-  Other Names for This Gene
  Alternate Gene Symbols: B1APY6, B1APY7, B7Z4G7, ELAV4_HUMAN, ENST00000448907.1, ENST00000448907.2, ENST00000448907.3, ENST00000448907.4, ENST00000448907.5, ENST00000448907.6, HUD, NM_001324208, P26378, PNEM, Q8IYD4, Q96J74, Q96J75, Q9UD24, uc001cry.1, uc001cry.2, uc001cry.3, uc001cry.4
UCSC ID: ENST00000448907.7
RefSeq Accession: NM_001144777
Protein: P26378 (aka ELAV4_HUMAN or ELV4_HUMAN)
CCDS: CCDS72788.1, CCDS553.1, CCDS44140.1, CCDS44138.1, CCDS53315.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.