Human Gene DNMBP (ENST00000543621.6) from GENCODE V44
  Description: Homo sapiens dynamin binding protein (DNMBP), transcript variant 3, mRNA. (from RefSeq NM_001318327)
RefSeq Summary (NM_001318327): This gene encodes a protein belonging to the guanine nucleotide exchange factor family, and which regulates the configuration of cell junctions. It contains multiple binding sites for dynamin and thus links dynamin to actin regulatory proteins. Polymorphisms in this gene have been linked to Alzheimer's disease in some populations, though there are conflicting reports of such linkages in other populations. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015].
Gencode Transcript: ENST00000543621.6
Gencode Gene: ENSG00000107554.17
Transcript (Including UTRs)
   Position: hg38 chr10:99,875,577-99,914,082 Size: 38,506 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg38 chr10:99,877,151-99,914,076 Size: 36,926 Coding Exon Count: 14 

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:99,875,577-99,914,082)mRNA (may differ from genome)Protein (865 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIOMIMPubMed
UniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.22 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 229.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -451.701574-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC041628 - Homo sapiens dynamin binding protein, mRNA (cDNA clone MGC:52388 IMAGE:4329464), complete cds.
AK128576 - Homo sapiens cDNA FLJ46735 fis, clone TRACH3020605, highly similar to Dynamin-binding protein.
AB023227 - Homo sapiens mRNA for KIAA1010 protein, partial cds.
AL833283 - Homo sapiens mRNA; cDNA DKFZp451J178 (from clone DKFZp451J178).
AK303479 - Homo sapiens cDNA FLJ51432 complete cds, highly similar to Dynamin-binding protein.
JD214138 - Sequence 195162 from Patent EP1572962.
JD500394 - Sequence 481418 from Patent EP1572962.
JD195230 - Sequence 176254 from Patent EP1572962.
JD387743 - Sequence 368767 from Patent EP1572962.
JD554506 - Sequence 535530 from Patent EP1572962.
JD274248 - Sequence 255272 from Patent EP1572962.
JD158400 - Sequence 139424 from Patent EP1572962.
JD468467 - Sequence 449491 from Patent EP1572962.
JD506240 - Sequence 487264 from Patent EP1572962.
JD392951 - Sequence 373975 from Patent EP1572962.
JD416367 - Sequence 397391 from Patent EP1572962.
JD425858 - Sequence 406882 from Patent EP1572962.
JD194455 - Sequence 175479 from Patent EP1572962.
JD480539 - Sequence 461563 from Patent EP1572962.
JD291297 - Sequence 272321 from Patent EP1572962.
JD067827 - Sequence 48851 from Patent EP1572962.
JD464819 - Sequence 445843 from Patent EP1572962.
JD243604 - Sequence 224628 from Patent EP1572962.
JD091694 - Sequence 72718 from Patent EP1572962.
JD067362 - Sequence 48386 from Patent EP1572962.
JD313855 - Sequence 294879 from Patent EP1572962.
JD127722 - Sequence 108746 from Patent EP1572962.
JD409858 - Sequence 390882 from Patent EP1572962.
AY196211 - Homo sapiens TUBA mRNA, complete cds.
KJ902316 - Synthetic construct Homo sapiens clone ccsbBroadEn_11710 DNMBP gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A1C7CYY6, ENST00000543621.1, ENST00000543621.2, ENST00000543621.3, ENST00000543621.4, ENST00000543621.5, NM_001318327, uc001kqg.1, uc001kqg.2, uc001kqg.3, uc001kqg.4
UCSC ID: ENST00000543621.6
RefSeq Accession: NM_001318327
CCDS: CCDS81494.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.