Human Gene RNH1 (ENST00000534797.5) from GENCODE V44
  Description: Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis. (from UniProt P13489)
RefSeq Summary (NM_203385): Placental ribonuclease inhibitor (PRI) is a member of a family of proteinaceous cytoplasmic RNase inhibitors that occur in many tissues and bind to both intracellular and extracellular RNases (summarized by Lee et al., 1988 [PubMed 3219362]). In addition to control of intracellular RNases, the inhibitor may have a role in the regulation of angiogenin (MIM 105850). Ribonuclease inhibitor, of 50,000 Da, binds to ribonucleases and holds them in a latent form. Since neutral and alkaline ribonucleases probably play a critical role in the turnover of RNA in eukaryotic cells, RNH may be essential for control of mRNA turnover; the interaction of eukaryotic cells with ribonuclease may be reversible in vivo.[supplied by OMIM, Jul 2010].
Gencode Transcript: ENST00000534797.5
Gencode Gene: ENSG00000023191.17
Transcript (Including UTRs)
   Position: hg38 chr11:494,512-503,570 Size: 9,059 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg38 chr11:494,691-502,162 Size: 7,472 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:494,512-503,570)mRNA (may differ from genome)Protein (461 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
HPRDLynxMalacardsMGIneXtProtPubMed
UniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: RINI_HUMAN
DESCRIPTION: RecName: Full=Ribonuclease inhibitor; AltName: Full=Placental ribonuclease inhibitor; Short=Placental RNase inhibitor; AltName: Full=Ribonuclease/angiogenin inhibitor 1; Short=RAI;
FUNCTION: Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.
SUBUNIT: Forms high-affinity heterodimers with RNASE1, ANG and RNASE2.
INTERACTION: P03950:ANG; NbExp=2; IntAct=EBI-1237106, EBI-525291; P07998:RNASE1; NbExp=2; IntAct=EBI-1237106, EBI-2823523; P61823:RNASE1 (xeno); NbExp=3; IntAct=EBI-1237106, EBI-908364;
SUBCELLULAR LOCATION: Cytoplasm.
DOMAIN: The LRR domain forms a horseshoe-shaped structure that interacts tightly with target RNAses via a large protein interaction surface on its interior side.
PTM: The N-terminus is blocked.
PTM: At least 30 of the 32 cysteine residues are in the reduced form.
SIMILARITY: Contains 15 LRR (leucine-rich) repeats.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: RNH1
Diseases sorted by gene-association score: osteogenesis imperfecta, type v (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 65.53 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 1638.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -645.601408-0.459 Picture PostScript Text
3' UTR -45.20179-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003590 - Leu-rich_rpt_RNase_inh_sub-typ

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1A4Y - X-ray MuPIT 1Z7X - X-ray MuPIT 2BEX - X-ray MuPIT 2Q4G - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P13489
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008428 ribonuclease inhibitor activity

Biological Process:
GO:0006402 mRNA catabolic process
GO:0043086 negative regulation of catalytic activity
GO:0045765 regulation of angiogenesis

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0032311 angiogenin-PRI complex
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AL161967 - Homo sapiens mRNA; cDNA DKFZp434K249 (from clone DKFZp434K249).
LF384314 - JP 2014500723-A/191817: Polycomb-Associated Non-Coding RNAs.
MA619891 - JP 2018138019-A/191817: Polycomb-Associated Non-Coding RNAs.
AK057144 - Homo sapiens cDNA FLJ32582 fis, clone SPLEN2000310.
BC011186 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone IMAGE:4151106), partial cds.
BC003506 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone MGC:10457 IMAGE:2959514), complete cds.
BC024037 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone MGC:10747 IMAGE:2959514), complete cds.
BC047730 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone MGC:54054 IMAGE:5788220), complete cds.
BC003075 - Homo sapiens cDNA clone IMAGE:3506537, **** WARNING: chimeric clone ****.
BC000677 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone MGC:844 IMAGE:3349381), complete cds.
BC014629 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone MGC:4569 IMAGE:3029730), complete cds.
BC011500 - Homo sapiens ribonuclease/angiogenin inhibitor 1, mRNA (cDNA clone MGC:18200 IMAGE:4155804), complete cds.
AB209196 - Homo sapiens mRNA for ribonuclease/angiogenin inhibitor variant protein.
AK311379 - Homo sapiens cDNA, FLJ18421.
X13973 - Human mRNA for ribonuclease/angiogenin inhibitor (RAI).
M22414 - Human placental ribonuclease inhibitor mRNA, complete cds.
M36717 - Human ribonuclease/angiogenin inhibitor (RAI) mRNA, complete cds.
JD539653 - Sequence 520677 from Patent EP1572962.
JD319199 - Sequence 300223 from Patent EP1572962.
JD393420 - Sequence 374444 from Patent EP1572962.
HM005477 - Homo sapiens clone HTL-T-164 testicular tissue protein Li 164 mRNA, complete cds.
JD487274 - Sequence 468298 from Patent EP1572962.
JF432836 - Synthetic construct Homo sapiens clone IMAGE:100074156 ribonuclease/angiogenin inhibitor 1 (RNH1) gene, encodes complete protein.
KJ897476 - Synthetic construct Homo sapiens clone ccsbBroadEn_06870 RNH1 gene, encodes complete protein.
KJ897477 - Synthetic construct Homo sapiens clone ccsbBroadEn_06871 RNH1 gene, encodes complete protein.
LF370552 - JP 2014500723-A/178055: Polycomb-Associated Non-Coding RNAs.
MA606129 - JP 2018138019-A/178055: Polycomb-Associated Non-Coding RNAs.
DL492073 - Novel nucleic acids.
DL490619 - Novel nucleic acids.
AK027172 - Homo sapiens cDNA: FLJ23519 fis, clone LNG04908.
JD024986 - Sequence 6010 from Patent EP1572962.
JD027673 - Sequence 8697 from Patent EP1572962.
JD021884 - Sequence 2908 from Patent EP1572962.
JD030271 - Sequence 11295 from Patent EP1572962.
AK308340 - Homo sapiens cDNA, FLJ98288.
AK310173 - Homo sapiens cDNA, FLJ17215.
LF370554 - JP 2014500723-A/178057: Polycomb-Associated Non-Coding RNAs.
MA606131 - JP 2018138019-A/178057: Polycomb-Associated Non-Coding RNAs.
LF370555 - JP 2014500723-A/178058: Polycomb-Associated Non-Coding RNAs.
MA606132 - JP 2018138019-A/178058: Polycomb-Associated Non-Coding RNAs.
JD398065 - Sequence 379089 from Patent EP1572962.
JD143256 - Sequence 124280 from Patent EP1572962.
JD043298 - Sequence 24322 from Patent EP1572962.
JD423554 - Sequence 404578 from Patent EP1572962.
JD121746 - Sequence 102770 from Patent EP1572962.
JD220383 - Sequence 201407 from Patent EP1572962.
JD278516 - Sequence 259540 from Patent EP1572962.
JD176220 - Sequence 157244 from Patent EP1572962.
JD197871 - Sequence 178895 from Patent EP1572962.
JD119183 - Sequence 100207 from Patent EP1572962.
JD212498 - Sequence 193522 from Patent EP1572962.
JD474788 - Sequence 455812 from Patent EP1572962.
JD255507 - Sequence 236531 from Patent EP1572962.
JD369104 - Sequence 350128 from Patent EP1572962.
JD077197 - Sequence 58221 from Patent EP1572962.
JD076754 - Sequence 57778 from Patent EP1572962.
JD393235 - Sequence 374259 from Patent EP1572962.
JD123862 - Sequence 104886 from Patent EP1572962.
JD209634 - Sequence 190658 from Patent EP1572962.
JD388596 - Sequence 369620 from Patent EP1572962.
JD157562 - Sequence 138586 from Patent EP1572962.
JD380736 - Sequence 361760 from Patent EP1572962.
JD253403 - Sequence 234427 from Patent EP1572962.
JD206898 - Sequence 187922 from Patent EP1572962.
JD072499 - Sequence 53523 from Patent EP1572962.
JD316812 - Sequence 297836 from Patent EP1572962.
JD483962 - Sequence 464986 from Patent EP1572962.
JD353768 - Sequence 334792 from Patent EP1572962.
JD195522 - Sequence 176546 from Patent EP1572962.
JD388701 - Sequence 369725 from Patent EP1572962.
JD182982 - Sequence 164006 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AL161967, ENST00000534797.1, ENST00000534797.2, ENST00000534797.3, ENST00000534797.4, P13489, PRI, Q8IZK8, Q96FD7, Q9BQ80, Q9UDK6, RINI_HUMAN, RNH, uc001lpk.1
UCSC ID: ENST00000534797.5
RefSeq Accession: NM_203385
Protein: P13489 (aka RINI_HUMAN)
CCDS: CCDS7697.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.