Human Gene ACAD10 (ENST00000313698.9) from GENCODE V44
  Description: Homo sapiens acyl-CoA dehydrogenase family member 10 (ACAD10), transcript variant 2, mRNA. (from RefSeq NM_025247)
RefSeq Summary (NM_025247): This gene encodes a member of the acyl-CoA dehydrogenase family of enzymes (ACADs), which participate in the beta-oxidation of fatty acids in mitochondria. The encoded enzyme contains a hydrolase domain at the N-terminal portion, a serine/threonine protein kinase catlytic domain in the central region, and a conserved ACAD domain at the C-terminus. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, Nov 2008].
Gencode Transcript: ENST00000313698.9
Gencode Gene: ENSG00000111271.15
Transcript (Including UTRs)
   Position: hg38 chr12:111,686,053-111,757,099 Size: 71,047 Total Exon Count: 21 Strand: +
Coding Region
   Position: hg38 chr12:111,692,710-111,756,473 Size: 63,764 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:111,686,053-111,757,099)mRNA (may differ from genome)Protein (1059 aa)
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GeneCardsHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACD10_HUMAN
DESCRIPTION: RecName: Full=Acyl-CoA dehydrogenase family member 10; Short=ACAD-10; EC=1.3.99.-;
FUNCTION: Acyl-CoA dehydrogenase only active with R- and S-2- methyl-C15-CoA.
CATALYTIC ACTIVITY: Acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
COFACTOR: FAD (By similarity).
TISSUE SPECIFICITY: Widely expressed with highest expression in fetal brain, followed by heart, muscle, kidney and adult brain. Expression levels varying from isoform to isoform.
SIMILARITY: Belongs to the acyl-CoA dehydrogenase family.
SEQUENCE CAUTION: Sequence=AAH15056.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.51 RPKM in Kidney - Cortex
Total median expression: 263.19 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -74.20200-0.371 Picture PostScript Text
3' UTR -240.70626-0.385 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006092 - Acyl-CoA_DH_N
IPR006090 - Acyl-CoA_Oxase/DH_1
IPR006091 - Acyl-CoA_Oxase/DH_cen-dom
IPR009075 - AcylCo_DH/oxidase_C
IPR013786 - AcylCoA_DH/ox_N
IPR009100 - AcylCoA_DH/oxidase
IPR002575 - Aminoglycoside_PTrfase
IPR023214 - HAD-like_dom
IPR006402 - HAD-SF_hydro_IA_v3
IPR011945 - HAD-SF_ppase_IA/epoxid_hydro_N
IPR005833 - Haloacid_DH/epoxide_hydro
IPR011009 - Kinase-like_dom

Pfam Domains:
PF00441 - Acyl-CoA dehydrogenase, C-terminal domain
PF02770 - Acyl-CoA dehydrogenase, middle domain
PF02771 - Acyl-CoA dehydrogenase, N-terminal domain
PF01636 - Phosphotransferase enzyme family

ModBase Predicted Comparative 3D Structure on Q6JQN1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGD  WormBase 
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003995 acyl-CoA dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
GO:0016787 hydrolase activity
GO:0050660 flavin adenine dinucleotide binding

Biological Process:
GO:0006635 fatty acid beta-oxidation
GO:0008152 metabolic process
GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix


-  Descriptions from all associated GenBank mRNAs
  AK310923 - Homo sapiens cDNA, FLJ17965.
AK092356 - Homo sapiens cDNA FLJ35037 fis, clone OCBBF2016729, moderately similar to Probable acyl-CoA dehydrogenase - Deinococcus radiodurans.
AX747497 - Sequence 1022 from Patent EP1308459.
AL832043 - Homo sapiens mRNA; cDNA DKFZp313G1710 (from clone DKFZp313G1710).
BC015056 - Homo sapiens acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:3922910), complete cds.
AY323912 - Homo sapiens ACAD 10 mRNA, complete cds.
JD220216 - Sequence 201240 from Patent EP1572962.
JD189116 - Sequence 170140 from Patent EP1572962.
BC126358 - Homo sapiens acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone MGC:161636 IMAGE:8992074), complete cds.
CU677201 - Synthetic construct Homo sapiens gateway clone IMAGE:100016851 5' read ACAD10 mRNA.
KJ903306 - Synthetic construct Homo sapiens clone ccsbBroadEn_12700 ACAD10 gene, encodes complete protein.
BC003698 - Homo sapiens acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:3461017).
BC054886 - Homo sapiens cDNA clone IMAGE:6597672, partial cds.
JD500101 - Sequence 481125 from Patent EP1572962.
AK097425 - Homo sapiens cDNA FLJ40106 fis, clone TESTI2006667, moderately similar to Probable acyl-CoA dehydrogenase.
JD389041 - Sequence 370065 from Patent EP1572962.
JD064977 - Sequence 46001 from Patent EP1572962.
JD537171 - Sequence 518195 from Patent EP1572962.
JD385886 - Sequence 366910 from Patent EP1572962.
JD317770 - Sequence 298794 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6JQN1 (Reactome details) participates in the following event(s):

R-HSA-5695980 ACAD10 dehydrogenates S-2MPDA-CoA
R-HSA-77289 Mitochondrial Fatty Acid Beta-Oxidation
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACD10_HUMAN, ENST00000313698.1, ENST00000313698.2, ENST00000313698.3, ENST00000313698.4, ENST00000313698.5, ENST00000313698.6, ENST00000313698.7, ENST00000313698.8, NM_025247, Q6JQN1, Q8N828, Q8NAP2, Q96BX5, uc001tsq.1, uc001tsq.2, uc001tsq.3, uc001tsq.4, uc001tsq.5
UCSC ID: ENST00000313698.9
RefSeq Accession: NM_025247
Protein: Q6JQN1 (aka ACD10_HUMAN)
CCDS: CCDS31903.1, CCDS44973.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.