Human Gene IPO4 (ENST00000354464.11) from GENCODE V44
  Description: Homo sapiens importin 4 (IPO4), transcript variant 2, non-coding RNA. (from RefSeq NR_051979)
Gencode Transcript: ENST00000354464.11
Gencode Gene: ENSG00000196497.17
Transcript (Including UTRs)
   Position: hg38 chr14:24,180,219-24,188,816 Size: 8,598 Total Exon Count: 30 Strand: -
Coding Region
   Position: hg38 chr14:24,180,442-24,188,787 Size: 8,346 Coding Exon Count: 30 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:24,180,219-24,188,816)mRNA (may differ from genome)Protein (1081 aa)
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-  Comments and Description Text from UniProtKB
  ID: IPO4_HUMAN
DESCRIPTION: RecName: Full=Importin-4; Short=Imp4; AltName: Full=Importin-4b; Short=Imp4b; AltName: Full=Ran-binding protein 4; Short=RanBP4;
FUNCTION: Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran- dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of RPS3A. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.
SUBUNIT: Binds with high affinity to RPS3A. The binding is coupled to RanGTP cycles. Binds to human cytomegalovirus UL84.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity).
SIMILARITY: Belongs to the importin beta family.
SIMILARITY: Contains 6 HEAT repeats.
SIMILARITY: Contains 1 importin N-terminal domain.
SEQUENCE CAUTION: Sequence=BAB15616.1; Type=Frameshift; Positions=234; Sequence=BAB55421.1; Type=Erroneous initiation; Sequence=BAC11174.1; Type=Erroneous initiation; Sequence=CAD62595.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -11.3029-0.390 Picture PostScript Text
3' UTR -59.70223-0.268 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR021133 - HEAT_type_2
IPR001494 - Importin-beta_N

Pfam Domains:
PF03810 - Importin-beta N-terminal domain

ModBase Predicted Comparative 3D Structure on Q8TEX9
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
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Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008139 nuclear localization sequence binding
GO:0008536 Ran GTPase binding
GO:0008565 protein transporter activity

Biological Process:
GO:0000060 protein import into nucleus, translocation
GO:0006335 DNA replication-dependent nucleosome assembly
GO:0006336 DNA replication-independent nucleosome assembly
GO:0006607 NLS-bearing protein import into nucleus
GO:0006610 ribosomal protein import into nucleus
GO:0006886 intracellular protein transport
GO:0015031 protein transport

Cellular Component:
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0031965 nuclear membrane
GO:0032991 macromolecular complex
GO:0034399 nuclear periphery
GO:0005643 nuclear pore


-  Descriptions from all associated GenBank mRNAs
  LF210083 - JP 2014500723-A/17586: Polycomb-Associated Non-Coding RNAs.
MA445660 - JP 2018138019-A/17586: Polycomb-Associated Non-Coding RNAs.
AK027871 - Homo sapiens cDNA FLJ14965 fis, clone SKNMC1000011, weakly similar to PUTATIVE IMPORTIN BETA-4 SUBUNIT.
AK094897 - Homo sapiens cDNA FLJ37578 fis, clone BRCOC2003732, highly similar to Importin-4.
BC110804 - Homo sapiens importin 4, mRNA (cDNA clone MGC:131665 IMAGE:6164334), complete cds.
AK074743 - Homo sapiens cDNA FLJ90262 fis, clone NT2RM4000965, weakly similar to PUTATIVE IMPORTIN BETA-4 SUBUNIT.
AK057044 - Homo sapiens cDNA FLJ32482 fis, clone SKNMC2001324, highly similar to Importin-4.
AB208897 - Homo sapiens mRNA for IPO4 protein variant protein.
AK056527 - Homo sapiens cDNA FLJ31965 fis, clone NT2RP7007643, weakly similar to PUTATIVE IMPORTIN BETA-4 SUBUNIT.
BC003690 - Homo sapiens importin 4, mRNA (cDNA clone IMAGE:3452343), partial cds.
AK026991 - Homo sapiens cDNA: FLJ23338 fis, clone HEP13242.
AK056702 - Homo sapiens cDNA FLJ32140 fis, clone PLACE5000058, highly similar to Importin-4.
AK094107 - Homo sapiens cDNA FLJ36788 fis, clone ADRGL2004451, highly similar to Importin-4.
AK095306 - Homo sapiens cDNA FLJ37987 fis, clone CTONG2011429, highly similar to Importin-4.
AK057277 - Homo sapiens cDNA FLJ32715 fis, clone TESTI2000784, highly similar to Importin-4.
BX248267 - human full-length cDNA clone CS0DC014YJ21 of Neuroblastoma of Homo sapiens (human).
AK302097 - Homo sapiens cDNA FLJ58302 complete cds, highly similar to Importin-4.
BC136759 - Homo sapiens importin 4, mRNA (cDNA clone MGC:168372 IMAGE:9020749), complete cds.
BC144399 - Homo sapiens cDNA clone IMAGE:9052920.
BC144400 - Homo sapiens cDNA clone IMAGE:9052921, with apparent retained intron.
AB209476 - Homo sapiens mRNA for importin 4 variant protein.
JD104176 - Sequence 85200 from Patent EP1572962.
AF411122 - Homo sapiens importin 4 mRNA, complete cds.
JD535363 - Sequence 516387 from Patent EP1572962.
AK314305 - Homo sapiens cDNA, FLJ95062.
CR457367 - Homo sapiens full open reading frame cDNA clone RZPDo834C0521D for gene IPO4, importin 4; complete cds, incl. stopcodon.
LF334541 - JP 2014500723-A/142044: Polycomb-Associated Non-Coding RNAs.
MA570118 - JP 2018138019-A/142044: Polycomb-Associated Non-Coding RNAs.
LF334542 - JP 2014500723-A/142045: Polycomb-Associated Non-Coding RNAs.
MA570119 - JP 2018138019-A/142045: Polycomb-Associated Non-Coding RNAs.
LF334543 - JP 2014500723-A/142046: Polycomb-Associated Non-Coding RNAs.
MA570120 - JP 2018138019-A/142046: Polycomb-Associated Non-Coding RNAs.
LF334544 - JP 2014500723-A/142047: Polycomb-Associated Non-Coding RNAs.
MA570121 - JP 2018138019-A/142047: Polycomb-Associated Non-Coding RNAs.
CU678572 - Synthetic construct Homo sapiens gateway clone IMAGE:100020061 5' read IPO4 mRNA.
LF334545 - JP 2014500723-A/142048: Polycomb-Associated Non-Coding RNAs.
MA570122 - JP 2018138019-A/142048: Polycomb-Associated Non-Coding RNAs.
JD033929 - Sequence 14953 from Patent EP1572962.
JD023488 - Sequence 4512 from Patent EP1572962.
LF334546 - JP 2014500723-A/142049: Polycomb-Associated Non-Coding RNAs.
MA570123 - JP 2018138019-A/142049: Polycomb-Associated Non-Coding RNAs.
DQ587110 - Homo sapiens piRNA piR-54222, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RN95, ENST00000354464.1, ENST00000354464.10, ENST00000354464.2, ENST00000354464.3, ENST00000354464.4, ENST00000354464.5, ENST00000354464.6, ENST00000354464.7, ENST00000354464.8, ENST00000354464.9, IMP4B, IPO4_HUMAN, NR_051979, Q2NL96, Q86TZ9, Q8NCG8, Q8TEX9, Q96SJ3, Q9BTI4, Q9H5L0, RANBP4, uc001wmv.1, uc001wmv.2, uc001wmv.3
UCSC ID: ENST00000354464.11
RefSeq Accession: NM_024658
Protein: Q8TEX9 (aka IPO4_HUMAN)
CCDS: CCDS9616.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.