Human Gene SFTA3 (uc001wts.3) Description and Page Index
  Description: Homo sapiens surfactant associated 3 (SFTA3), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:36,942,494-36,988,817 Size: 46,324 Total Exon Count: 5 Strand: -


Page IndexSequence and LinksGenetic AssociationsMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:36,942,494-36,988,817)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedStanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): SFTA3
CDC HuGE Published Literature: SFTA3
Positive Disease Associations: Neuroblastoma
Related Studies:
  1. Neuroblastoma
    , , . [PubMed 0]

-  MalaCards Disease Associations
  MalaCards Gene Search: SFTA3
Diseases sorted by gene-association score: pulmonary surfactant metabolism dysfunction (3), spherocytosis, type 1 (2)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 103.38 RPKM in Thyroid
Total median expression: 161.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AY102071 - Homo sapiens surfactant associated protein H mRNA, complete sequence.
BC042093 - Homo sapiens cDNA clone IMAGE:5767072.
KF856952 - Homo sapiens Nkx2-1-associated long non-coding RNA lncRNA, complete sequence.
BC129834 - Homo sapiens cDNA clone IMAGE:40114610.
AK027147 - Homo sapiens cDNA: FLJ23494 fis, clone LNG01885.
JD556988 - Sequence 538012 from Patent EP1572962.
JD504961 - Sequence 485985 from Patent EP1572962.
JD491588 - Sequence 472612 from Patent EP1572962.
LQ270674 - Sequence 2 from Patent WO2016071350.
U33749 - Human thyroid transcription factor-1 (TTF-1) mRNA, complete cds.
D50740 - Homo sapiens mRNA for thyroid transcriptional factor-1, complete cds.
LF212489 - JP 2014500723-A/19992: Polycomb-Associated Non-Coding RNAs.
LF383584 - JP 2014500723-A/191087: Polycomb-Associated Non-Coding RNAs.
LF213289 - JP 2014500723-A/20792: Polycomb-Associated Non-Coding RNAs.
LQ932411 - Sequence 2 from Patent WO2014187881.
MA619161 - JP 2018138019-A/191087: Polycomb-Associated Non-Coding RNAs.
MA448066 - JP 2018138019-A/19992: Polycomb-Associated Non-Coding RNAs.
MA448866 - JP 2018138019-A/20792: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AY102071
UCSC ID: uc001wts.3
RefSeq Accession: NM_001101341

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AY102071.1
exon count: 5CDS single in 3' UTR: no RNA size: 1116
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 360.00frame shift in genome: no % Coverage: 92.65
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.