Human Gene SPATA7 (ENST00000393545.9) from GENCODE V44
Description: Homo sapiens spermatogenesis associated 7 (SPATA7), transcript variant 1, mRNA. (from RefSeq NM_018418) RefSeq Summary (NM_018418): This gene, originally isolated from testis, is also expressed in retina. Mutations in this gene are associated with Leber congenital amaurosis and juvenile retinitis pigmentosa. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2010]. Gencode Transcript: ENST00000393545.9 Gencode Gene: ENSG00000042317.17 Transcript (Including UTRs) Position: hg38 chr14:88,385,657-88,438,460 Size: 52,804 Total Exon Count: 12 Strand: + Coding Region Position: hg38 chr14:88,385,819-88,438,422 Size: 52,604 Coding Exon Count: 12
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.