Human Gene GOLGA8B (ENST00000342314.9) from GENCODE V44
  Description: May be involved in maintaining Golgi structure (By similarity). (from UniProt A8MQT2)
Gencode Transcript: ENST00000342314.9
Gencode Gene: ENSG00000215252.12
Transcript (Including UTRs)
   Position: hg38 chr15:34,525,207-34,536,010 Size: 10,804 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg38 chr15:34,527,632-34,535,912 Size: 8,281 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:34,525,207-34,536,010)mRNA (may differ from genome)Protein (603 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblExonPrimerGencodeGeneCardsHGNCLynx
MalacardsMGIneXtProtPubMedUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: GOG8B_HUMAN
DESCRIPTION: RecName: Full=Golgin subfamily A member 8B; AltName: Full=Golgin-67;
FUNCTION: May be involved in maintaining Golgi structure (By similarity).
SUBCELLULAR LOCATION: Golgi apparatus, Golgi stack membrane; Peripheral membrane protein.
TISSUE SPECIFICITY: Highly expressed in brain, heart and kidney. Detected at lower levels in liver, thymus, spleen, lung and peripheral blood leukocytes.
DOMAIN: Extended rod-like protein with coiled-coil domains.
MISCELLANEOUS: Antibodies against GM88 are present in serum from a patient with Sjoegren syndrome. Sera from patients with Sjoegren syndrome often contain antibodies that react with normal components of the Golgi complex.
SIMILARITY: Belongs to the GOLGA8 family.
CAUTION: A family of highly similar proteins (GOLGA8A, GOLGA8B, GOLGA8C, GOLGA8D, GOLGA8E, GOLGA8F, GOLGA8G) are encoded by a repeated region on chromosome 15q11-15q13. Our sequences are in agreement with HGNC nomenclature.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 90.26 RPKM in Thyroid
Total median expression: 1044.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.7098-0.272 Picture PostScript Text
3' UTR -610.902425-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024858 - Golgin_A

ModBase Predicted Comparative 3D Structure on A8MQT2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0032580 Golgi cisterna membrane


-  Descriptions from all associated GenBank mRNAs
  AL133593 - Homo sapiens mRNA; cDNA DKFZp434O159 (from clone DKFZp434O159).
DQ584872 - Homo sapiens piRNA piR-51984, complete sequence.
DQ597250 - Homo sapiens piRNA piR-35316, complete sequence.
BX647673 - Homo sapiens mRNA; cDNA DKFZp686O038 (from clone DKFZp686O038).
DQ599034 - Homo sapiens piRNA piR-37100, complete sequence.
AF164622 - Homo sapiens golgin-67 (GOLGA5) mRNA, complete cds.
DQ595587 - Homo sapiens piRNA piR-61699, complete sequence.
DQ600044 - Homo sapiens piRNA piR-38110, complete sequence.
JD516083 - Sequence 497107 from Patent EP1572962.
JD046799 - Sequence 27823 from Patent EP1572962.
JD349229 - Sequence 330253 from Patent EP1572962.
JD321423 - Sequence 302447 from Patent EP1572962.
JD237771 - Sequence 218795 from Patent EP1572962.
JD410884 - Sequence 391908 from Patent EP1572962.
JD419029 - Sequence 400053 from Patent EP1572962.
JD489934 - Sequence 470958 from Patent EP1572962.
JD058902 - Sequence 39926 from Patent EP1572962.
JD221946 - Sequence 202970 from Patent EP1572962.
DQ584148 - Homo sapiens piRNA piR-51260, complete sequence.
DQ591661 - Homo sapiens piRNA piR-58773, complete sequence.
BC144610 - Homo sapiens golgi autoantigen, golgin subfamily a, 8B, mRNA (cDNA clone MGC:178158 IMAGE:9053141), complete cds.
DQ572480 - Homo sapiens piRNA piR-40592, complete sequence.
JD303529 - Sequence 284553 from Patent EP1572962.
JD297834 - Sequence 278858 from Patent EP1572962.
JD314488 - Sequence 295512 from Patent EP1572962.
CR749361 - Homo sapiens mRNA; cDNA DKFZp779P0341 (from clone DKFZp779P0341).
AK097551 - Homo sapiens cDNA FLJ40232 fis, clone TESTI2023033, highly similar to Homo sapiens golgin 67 mRNA.
AF163441 - Homo sapiens golgin 67 mRNA, complete cds.
JD312566 - Sequence 293590 from Patent EP1572962.
JD082512 - Sequence 63536 from Patent EP1572962.
BC093673 - Homo sapiens golgi autoantigen, golgin subfamily a, 8A, mRNA (cDNA clone MGC:120708 IMAGE:7939518), complete cds.
BC104800 - Homo sapiens golgi autoantigen, golgin subfamily a, 8A, mRNA (cDNA clone MGC:132460 IMAGE:8143803), complete cds.
BC143254 - Homo sapiens golgi autoantigen, golgin subfamily a, 8B, mRNA (cDNA clone MGC:176773 IMAGE:9051756), complete cds.
AB384017 - Synthetic construct DNA, clone: pF1KSDA0855, Homo sapiens GOLGA8A gene for golgin subfamily A member 8A/B, complete cds, without stop codon, in Flexi system.
KJ898434 - Synthetic construct Homo sapiens clone ccsbBroadEn_07828 GOLGA8A gene, encodes complete protein.
DQ597116 - Homo sapiens piRNA piR-35182, complete sequence.
DQ581935 - Homo sapiens piRNA piR-32047, complete sequence.
DQ570015 - Homo sapiens piRNA piR-30127, complete sequence.
DQ573778 - Homo sapiens piRNA piR-41890, complete sequence.
JD205481 - Sequence 186505 from Patent EP1572962.
DQ573481 - Homo sapiens piRNA piR-41593, complete sequence.
DQ586339 - Homo sapiens piRNA piR-53451, complete sequence.
BC032774 - Homo sapiens golgi autoantigen, golgin subfamily a, 8A, mRNA (cDNA clone IMAGE:4431785), partial cds.
JD085536 - Sequence 66560 from Patent EP1572962.
AK123221 - Homo sapiens cDNA FLJ41227 fis, clone BRAMY2030545.
JD123107 - Sequence 104131 from Patent EP1572962.
DQ590489 - Homo sapiens piRNA piR-57601, complete sequence.
JD121250 - Sequence 102274 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NLZ2, A8MQT2, BX647673, ENST00000342314.1, ENST00000342314.2, ENST00000342314.3, ENST00000342314.4, ENST00000342314.5, ENST00000342314.6, ENST00000342314.7, ENST00000342314.8, GOG8B_HUMAN, O94937, Q2M3S9, Q9NZG8, Q9NZW0, Q9NZW3, uc001ziq.1, uc001ziq.2, uc001ziq.3, uc001ziq.4
UCSC ID: ENST00000342314.9
RefSeq Accession: NM_001023567
Protein: A8MQT2 (aka GOG8B_HUMAN)
CCDS: CCDS45211.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.