Human Gene KIF22 (ENST00000160827.9) from GENCODE V44
  Description: Homo sapiens kinesin family member 22 (KIF22), transcript variant 1, mRNA. (from RefSeq NM_007317)
RefSeq Summary (NM_007317): The protein encoded by this gene is a member of the kinesin-like protein family. The family members are microtubule-dependent molecular motors that transport organelles within cells and move chromosomes during cell division. The C-terminal half of this protein has been shown to bind DNA. Studies with the Xenopus homolog suggests its essential role in metaphase chromosome alignment and maintenance. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2012].
Gencode Transcript: ENST00000160827.9
Gencode Gene: ENSG00000079616.14
Transcript (Including UTRs)
   Position: hg38 chr16:29,790,751-29,805,384 Size: 14,634 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr16:29,790,760-29,805,310 Size: 14,551 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:29,790,751-29,805,384)mRNA (may differ from genome)Protein (665 aa)
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-  Comments and Description Text from UniProtKB
  ID: KIF22_HUMAN
DESCRIPTION: RecName: Full=Kinesin-like protein KIF22; AltName: Full=Kinesin-like DNA-binding protein; AltName: Full=Kinesin-like protein 4;
FUNCTION: Kinesin family that is involved in spindle formation and the movements of chromosomes during mitosis and meiosis. Binds to microtubules and to DNA.
SUBUNIT: Interacts with FAM83D.
SUBCELLULAR LOCATION: Nucleus. Cytoplasm, cytoskeleton (Probable).
TISSUE SPECIFICITY: Expressed in bone, cartilage, joint capsule, ligament, skin, and primary cultured chondrocytes.
PTM: Ubiquitinated; mediated by SIAH1 and leading to its subsequent proteasomal degradation (Probable).
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Defects in KIF22 are the cause of spondyloepimetaphyseal dysplasia with joint laxity, type 2 (SEMDJL2) [MIM:603546]. A bone disease characterized by short stature, distinctive midface retrusion, progressive knee malalignment (genu valgum and/or varum), generalized ligamentous laxity, and mild spinal deformity. Intellectual development is not impaired. Radiographic characteristics include significantly retarded epiphyseal ossification that evolves into epiphyseal dysplasia and precocious osteoarthritis, metaphyseal irregularities and vertical striations, constricted femoral neck, slender metacarpals and metatarsals, and mild thoracolumbar kyphosis or scoliosis with normal or mild platyspondyly. The most distinctive features for differential diagnosis of SEMDJL2 are the slender metacarpals and phalanges and the progressive degeneration of carpal bones; however, these 2 features are evident only in older children and young adults. The soft consistency of cartilage in the airways leads to laryngotracheomalacia with proneness to respiratory obstruction and inspiratory stridor in infancy and childhood.
SIMILARITY: Belongs to the kinesin-like protein family.
SIMILARITY: Contains 1 kinesin-motor domain.
SEQUENCE CAUTION: Sequence=AAC08709.1; Type=Erroneous gene model prediction; Sequence=EAW80007.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KIF22
Diseases sorted by gene-association score: spondyloepimetaphyseal dysplasia with joint laxity, type 2* (1650), spondyloepimetaphyseal dysplasia with multiple dislocations* (400), spondyloepimetaphyseal dysplasia (27), scoliosis (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.51 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 442.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -5.0074-0.068 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003583 - Hlx-hairpin-Hlx_DNA-bd_motif
IPR019821 - Kinesin_motor_CS
IPR001752 - Kinesin_motor_dom

Pfam Domains:
PF00225 - Kinesin motor domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2EDU - NMR MuPIT 3BFN - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14807
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008017 microtubule binding
GO:0016887 ATPase activity

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006281 DNA repair
GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
GO:0007018 microtubule-based movement
GO:0007062 sister chromatid cohesion
GO:0007080 mitotic metaphase plate congression
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0051310 metaphase plate congression

Cellular Component:
GO:0000776 kinetochore
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005871 kinesin complex
GO:0005874 microtubule
GO:0016607 nuclear speck
GO:0072686 mitotic spindle


-  Descriptions from all associated GenBank mRNAs
  AK312234 - Homo sapiens cDNA, FLJ92525, highly similar to Homo sapiens kinesin family member 22 (KIF22), mRNA.
AK223431 - Homo sapiens mRNA for kinesin family member 22 variant, clone: FCC111B02.
AK297893 - Homo sapiens cDNA FLJ51003 complete cds, highly similar to Kinesin-like protein KIF22.
AB017430 - Homo sapiens mRNA for kinesin-like DNA binding protein, complete cds.
BC004352 - Homo sapiens kinesin family member 22, mRNA (cDNA clone MGC:1573 IMAGE:3535435), complete cds.
AK316389 - Homo sapiens cDNA, FLJ79288 complete cds, highly similar to Kinesin-like protein KIF22.
BC028155 - Homo sapiens kinesin family member 22, mRNA (cDNA clone MGC:40049 IMAGE:5241557), complete cds.
KJ891519 - Synthetic construct Homo sapiens clone ccsbBroadEn_00913 KIF22 gene, encodes complete protein.
BT007259 - Homo sapiens kinesin-like 4 mRNA, complete cds.
DQ890771 - Synthetic construct clone IMAGE:100003401; FLH165825.01X; RZPDo839H03160D kinesin family member 22 (KIF22) gene, encodes complete protein.
DQ893652 - Synthetic construct clone IMAGE:100006282; FLH188063.01X; RZPDo839G01150D kinesin family member 22 (KIF22) gene, encodes complete protein.
DQ893932 - Synthetic construct Homo sapiens clone IMAGE:100008392; FLH165823.01L; RZPDo839H03159D kinesin family member 22 (KIF22) gene, encodes complete protein.
DQ895829 - Synthetic construct Homo sapiens clone IMAGE:100010289; FLH188059.01L; RZPDo839G01149D kinesin family member 22 (KIF22) gene, encodes complete protein.
AK316050 - Homo sapiens cDNA, FLJ78949 complete cds, highly similar to Kinesin-like protein KIF22.
AK294380 - Homo sapiens cDNA FLJ53835 complete cds, highly similar to Kinesin-like protein KIF22.
L29096 - Homo sapiens oriP binding protein (OBP-2) mRNA, complete cds.
L29095 - Homo sapiens oriP binding protein (OBP-1) mRNA, 3' end.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14807 (Reactome details) participates in the following event(s):

R-HSA-984671 Chromokinesins form dimers
R-HSA-983266 Kinesins bind microtubules
R-HSA-6811426 Retrograde COPI vesicles bind kinesin and microtubules
R-HSA-6811423 Retrograde vesicle is tethered at the ER by the NRZ complex and t-SNAREs
R-HSA-983189 Kinesins
R-HSA-983231 Factors involved in megakaryocyte development and platelet production
R-HSA-109582 Hemostasis
R-HSA-2132295 MHC class II antigen presentation
R-HSA-6811434 COPI-dependent Golgi-to-ER retrograde traffic
R-HSA-1280218 Adaptive Immune System
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-168256 Immune System
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: B2R5M0, ENST00000160827.1, ENST00000160827.2, ENST00000160827.3, ENST00000160827.4, ENST00000160827.5, ENST00000160827.6, ENST00000160827.7, ENST00000160827.8, KID, KIF22_HUMAN, KNSL4, NM_007317, O60845, O94814, Q14807, Q53F58, Q9BT46, uc002dts.1, uc002dts.2, uc002dts.3, uc002dts.4, uc002dts.5, uc002dts.6
UCSC ID: ENST00000160827.9
RefSeq Accession: NM_007317
Protein: Q14807 (aka KIF22_HUMAN or KF22_HUMAN)
CCDS: CCDS10653.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.