Human Gene SNAI3-AS1 (uc002fli.4) Description and Page Index
  Description: Homo sapiens SNAI3 antisense RNA 1 (SNAI3-AS1), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr16:88,729,781-88,753,594 Size: 23,814 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:88,729,781-88,753,594)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneNetworkH-INVHGNC
LynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.76 RPKM in Brain - Cortex
Total median expression: 53.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX640980 - Homo sapiens mRNA; cDNA DKFZp686F23222 (from clone DKFZp686F23222).
BC015583 - Homo sapiens hypothetical protein MGC23284, mRNA (cDNA clone IMAGE:4637796), partial cds.
BC050404 - Homo sapiens hypothetical protein MGC23284, mRNA (cDNA clone IMAGE:5768920), partial cds.
JD476272 - Sequence 457296 from Patent EP1572962.
JD487667 - Sequence 468691 from Patent EP1572962.
JD069352 - Sequence 50376 from Patent EP1572962.
AY203928 - Homo sapiens FP17581 mRNA, complete cds.
DQ579745 - Homo sapiens piRNA piR-47857, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_024399
UCSC ID: uc002fli.4
RefSeq Accession: NR_024399

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_024399.1
exon count: 4CDS single in 3' UTR: no RNA size: 942
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 244.00frame shift in genome: no % Coverage: 97.98
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.