Human Gene AX748120 (uc002ilo.2) Description and Page Index
  Description: Homo sapiens cDNA FLJ36110 fis, clone TESTI2021939.
Transcript (Including UTRs)
   Position: hg19 chr17:45,401,616-45,402,367 Size: 752 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr17:45,401,795-45,402,115 Size: 321 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA StructureOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:45,401,616-45,402,367)mRNA (may differ from genome)Protein (106 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaExonPrimerGeneCards
MGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -59.60252-0.237 Picture PostScript Text
3' UTR -40.50179-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK093429 - Homo sapiens cDNA FLJ36110 fis, clone TESTI2021939.
AX748120 - Sequence 1645 from Patent EP1308459.

-  Other Names for This Gene
  Alternate Gene Symbols: uc002ilo.1
UCSC ID: uc002ilo.2
Representative RNA: AX748120

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX748120.1
exon count: 1CDS single in 3' UTR: no RNA size: 1686
ORF size: 321CDS single in intron: no Alignment % ID: 99.64
txCdsPredict score: 652.00frame shift in genome: no % Coverage: 44.60
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.